Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 192837 | 0.66 | 0.911807 |
Target: 5'- gAGGcagccGCUCucggugaCGGCGGCGGAguUGCUGACa- -3' miRNA: 3'- -UCC-----UGAG-------GCCGCCGCCU--GUGAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120458 | 0.66 | 0.917945 |
Target: 5'- cAGGAgaCaGGCGGCcaccucgaGGuCGCUGACGAc -3' miRNA: 3'- -UCCUgaGgCCGCCG--------CCuGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 90982 | 0.66 | 0.912376 |
Target: 5'- cGGAaaacCUCUGGCGGaCGGACuGC-AGCGu -3' miRNA: 3'- uCCU----GAGGCCGCC-GCCUG-UGaUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 147091 | 0.66 | 0.911807 |
Target: 5'- cAGcGAUUaCCGGCGGaGGACuccgauuucgaguACUGACGGc -3' miRNA: 3'- -UC-CUGA-GGCCGCCgCCUG-------------UGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 68154 | 0.66 | 0.932862 |
Target: 5'- uGGACgcggugaUCgCGGCGGCGcGCGC-GACGGa -3' miRNA: 3'- uCCUG-------AG-GCCGCCGCcUGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 81642 | 0.66 | 0.910663 |
Target: 5'- cAGGACaucagcagcaugucUCUGGUGucGCuGACGCUGACGGa -3' miRNA: 3'- -UCCUG--------------AGGCCGC--CGcCUGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 34431 | 0.66 | 0.912376 |
Target: 5'- uGGACUCCacggaucgcacGGcCGGgGGACGCgaauccuGCGGc -3' miRNA: 3'- uCCUGAGG-----------CC-GCCgCCUGUGau-----UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 74848 | 0.66 | 0.906589 |
Target: 5'- aGGGGCgcagguugaGGCGGCGGugGuaGACGGg -3' miRNA: 3'- -UCCUGagg------CCGCCGCCugUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 97928 | 0.66 | 0.912376 |
Target: 5'- cAGGACccgcaguuccUCCGGCGGCaG-CGCgu-CGAa -3' miRNA: 3'- -UCCUG----------AGGCCGCCGcCuGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 174124 | 0.66 | 0.933344 |
Target: 5'- cGGACUCCGugagagguGCGGCaucggccuGGACGCcgGAuCGAc -3' miRNA: 3'- uCCUGAGGC--------CGCCG--------CCUGUGa-UU-GCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 18186 | 0.66 | 0.912376 |
Target: 5'- cGGGACUcCCGuGCGauagccuuguccGCGGACuACUAcACGGa -3' miRNA: 3'- -UCCUGA-GGC-CGC------------CGCCUG-UGAU-UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 30384 | 0.66 | 0.90659 |
Target: 5'- uGGACgugacCUGGCGgaucGCGGACAacgugGACGAg -3' miRNA: 3'- uCCUGa----GGCCGC----CGCCUGUga---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 35614 | 0.66 | 0.912376 |
Target: 5'- cGGGAUcCaCGGCGGCGG-CGgcGGCGGg -3' miRNA: 3'- -UCCUGaG-GCCGCCGCCuGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 131247 | 0.66 | 0.917945 |
Target: 5'- cGGucguCUCCguGGCGGCGGACGuuCUGcGCGc -3' miRNA: 3'- uCCu---GAGG--CCGCCGCCUGU--GAU-UGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 59706 | 0.66 | 0.917945 |
Target: 5'- aAGGGCgCCGaGCGGCcGcGGCGCacGGCGAc -3' miRNA: 3'- -UCCUGaGGC-CGCCG-C-CUGUGa-UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 68539 | 0.66 | 0.90659 |
Target: 5'- gAGGAgg-CGGCGGCGGAgG-UGACGGc -3' miRNA: 3'- -UCCUgagGCCGCCGCCUgUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 181847 | 0.66 | 0.912376 |
Target: 5'- aAGGGCUUCcGCGGUaucGGACGCcu-CGAg -3' miRNA: 3'- -UCCUGAGGcCGCCG---CCUGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 135944 | 0.66 | 0.926913 |
Target: 5'- gGGGAuggcCUCUGGCGaucuuuucucgacaGCGGAaaACUGACGGa -3' miRNA: 3'- -UCCU----GAGGCCGC--------------CGCCUg-UGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 75799 | 0.66 | 0.923297 |
Target: 5'- gGGGGag-CGGCGGCGaGGCAcCUGGCa- -3' miRNA: 3'- -UCCUgagGCCGCCGC-CUGU-GAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 111937 | 0.66 | 0.912376 |
Target: 5'- uGGGCgccgCCGucGCGGUGGACGauuACGGg -3' miRNA: 3'- uCCUGa---GGC--CGCCGCCUGUgauUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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