miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 129980 0.67 0.896885
Target:  5'- -cGugUCCgcagaacgccgcgggGGCGGCGGACGa-GGCGAu -3'
miRNA:   3'- ucCugAGG---------------CCGCCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 153618 0.67 0.894374
Target:  5'- -cGGCUCgGGCGGCGc-CACUcgGACGGc -3'
miRNA:   3'- ucCUGAGgCCGCCGCcuGUGA--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 33647 0.67 0.894374
Target:  5'- cGGGGCgcgcuucgaccgUCCGGCGcGCGGGgagggcCGCU-GCGAg -3'
miRNA:   3'- -UCCUG------------AGGCCGC-CGCCU------GUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 203117 0.67 0.887951
Target:  5'- cGGGgUCCGGCGuGCGGuCG--AGCGGc -3'
miRNA:   3'- uCCUgAGGCCGC-CGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 105381 0.67 0.900588
Target:  5'- cGGACUCgcugaCGGcCGGCGaggaGGCGCUGACc- -3'
miRNA:   3'- uCCUGAG-----GCC-GCCGC----CUGUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 74585 0.67 0.867456
Target:  5'- aGGGACaguuggugccgUCGGUGGCGGugGCggcCGAg -3'
miRNA:   3'- -UCCUGa----------GGCCGCCGCCugUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 19565 0.67 0.88132
Target:  5'- uGGGugU-CGGUGGCGG-CGgUAGCGu -3'
miRNA:   3'- -UCCugAgGCCGCCGCCuGUgAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 127239 0.67 0.88132
Target:  5'- cGGGCg-CGGUGGCGGggaugaugaGCGCgAGCGAu -3'
miRNA:   3'- uCCUGagGCCGCCGCC---------UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 45107 0.67 0.894374
Target:  5'- gGGGucCUCCaGCGGCGG-CGaaGGCGAc -3'
miRNA:   3'- -UCCu-GAGGcCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 99422 0.67 0.88795
Target:  5'- aGGGGC-CCGaGCGGCaGACGCcgccuCGAc -3'
miRNA:   3'- -UCCUGaGGC-CGCCGcCUGUGauu--GCU- -5'
15928 5' -57.7 NC_004065.1 + 67129 0.67 0.88795
Target:  5'- uGGACagCGGCGcGCgccuGGACGCgaucgcgGACGAg -3'
miRNA:   3'- uCCUGagGCCGC-CG----CCUGUGa------UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 173450 0.67 0.88132
Target:  5'- -cGACguaCCGGUGGCGG-CGCUcGACGc -3'
miRNA:   3'- ucCUGa--GGCCGCCGCCuGUGA-UUGCu -5'
15928 5' -57.7 NC_004065.1 + 152309 0.68 0.845221
Target:  5'- cGGcGGCggugCCGGCGG-GGACGaUGACGGc -3'
miRNA:   3'- -UC-CUGa---GGCCGCCgCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 109121 0.68 0.837447
Target:  5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 194847 0.68 0.845221
Target:  5'- cAGGcCgaccaCGGCGGCGGACACg----- -3'
miRNA:   3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 205415 0.68 0.821394
Target:  5'- uGGcGCUUucgcaacaccggCGGCGGCGGugGCggcGACGAc -3'
miRNA:   3'- uCC-UGAG------------GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 29964 0.68 0.829503
Target:  5'- gGGGACcggugCUGGCGGCGG-CGgcGGCGGc -3'
miRNA:   3'- -UCCUGa----GGCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 111701 0.68 0.860231
Target:  5'- uGGACgUCGGCGGUcc-CGCUGGCGAc -3'
miRNA:   3'- uCCUGaGGCCGCCGccuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 188620 0.68 0.829503
Target:  5'- cGGGACcgugucgCCGGCGGCGaGCACguaccacaccACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcUGUGau--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 179679 0.68 0.852817
Target:  5'- gGGGGCUCgGgaucGCGGCGGugGCcacGCGu -3'
miRNA:   3'- -UCCUGAGgC----CGCCGCCugUGau-UGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.