miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 188620 0.68 0.829503
Target:  5'- cGGGACcgugucgCCGGCGGCGaGCACguaccacaccACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcUGUGau--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 109121 0.68 0.837447
Target:  5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 152309 0.68 0.845221
Target:  5'- cGGcGGCggugCCGGCGG-GGACGaUGACGGc -3'
miRNA:   3'- -UC-CUGa---GGCCGCCgCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 194847 0.68 0.845221
Target:  5'- cAGGcCgaccaCGGCGGCGGACACg----- -3'
miRNA:   3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 68500 0.69 0.787457
Target:  5'- cAGG-CUCaggugaGGCGGCGGACGCa----- -3'
miRNA:   3'- -UCCuGAGg-----CCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 115076 0.69 0.804712
Target:  5'- uGGAggCCGGCGGCGccgACUGAUGAu -3'
miRNA:   3'- uCCUgaGGCCGCCGCcugUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 99942 0.69 0.778634
Target:  5'- cGGACcgCCgcGGCGGCGGcUGCUGcuGCGAa -3'
miRNA:   3'- uCCUGa-GG--CCGCCGCCuGUGAU--UGCU- -5'
15928 5' -57.7 NC_004065.1 + 66744 0.69 0.778634
Target:  5'- cGGACcCCGGCGGCGu-CGCgacCGAa -3'
miRNA:   3'- uCCUGaGGCCGCCGCcuGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 116310 0.69 0.804712
Target:  5'- gAGGugUCggcguCGGCGGCGG-CAgcGGCGAc -3'
miRNA:   3'- -UCCugAG-----GCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 194573 0.69 0.813128
Target:  5'- cGGGCUCCGaccagcacGaCGGUGGACACcu-CGAa -3'
miRNA:   3'- uCCUGAGGC--------C-GCCGCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 192991 0.69 0.813128
Target:  5'- gAGGACgaCGGUcgacucucuGGCGGGCGgUAGCGGu -3'
miRNA:   3'- -UCCUGagGCCG---------CCGCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30764 0.69 0.813128
Target:  5'- cGGAaUCCgaGGuCGGCGGACGCgGACGc -3'
miRNA:   3'- uCCUgAGG--CC-GCCGCCUGUGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 32231 0.69 0.804712
Target:  5'- cGGGCgCUGGUGaccaacGCGGACACcGGCGAu -3'
miRNA:   3'- uCCUGaGGCCGC------CGCCUGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 223073 0.7 0.748708
Target:  5'- gAGGACUCCGucgacgcagcuuccGaCGGCGGACGC---CGAg -3'
miRNA:   3'- -UCCUGAGGC--------------C-GCCGCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 54503 0.7 0.76969
Target:  5'- gAGGACga-GGUGGUGGAgGCgguUGACGAg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUG---AUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 83448 0.7 0.731937
Target:  5'- cGGGCUCCGGCacgaGCGGcaccuuacccgcgACGCcGACGAu -3'
miRNA:   3'- uCCUGAGGCCGc---CGCC-------------UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30706 0.7 0.723452
Target:  5'- -cGACgUCgaGGUGGCGGACGCguugAACGAc -3'
miRNA:   3'- ucCUG-AGg-CCGCCGCCUGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 134024 0.7 0.760635
Target:  5'- uGGGAagugcgaUGGCGGCGGAgGCU-GCGAu -3'
miRNA:   3'- -UCCUgag----GCCGCCGCCUgUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 101812 0.7 0.760635
Target:  5'- -cGACUUCGGCGGUGGcgGgACUGGCa- -3'
miRNA:   3'- ucCUGAGGCCGCCGCC--UgUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 123014 0.7 0.74222
Target:  5'- cGGuCUCCGGCGaGCGuGACGuCcGACGGc -3'
miRNA:   3'- uCCuGAGGCCGC-CGC-CUGU-GaUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.