Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 82132 | 0.71 | 0.66568 |
Target: 5'- -uGACguaUCCGGCGGCgcGGACGCUGuaccuccugGCGAg -3' miRNA: 3'- ucCUG---AGGCCGCCG--CCUGUGAU---------UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 36118 | 0.71 | 0.66568 |
Target: 5'- cGGGGCcgcugCCGGCGGCGG-UugUggUGGu -3' miRNA: 3'- -UCCUGa----GGCCGCCGCCuGugAuuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 184803 | 0.71 | 0.704397 |
Target: 5'- gAGGACggugacgcaaCGGUGGCGGugGCggcAGCGGc -3' miRNA: 3'- -UCCUGag--------GCCGCCGCCugUGa--UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 200851 | 0.71 | 0.704397 |
Target: 5'- uGGAgUUCGGCGucgacgggggcGCGGGCGgUGGCGAa -3' miRNA: 3'- uCCUgAGGCCGC-----------CGCCUGUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 68754 | 0.71 | 0.694782 |
Target: 5'- cGGACUCgGacaucGCGGCGG-UGCUGGCGGc -3' miRNA: 3'- uCCUGAGgC-----CGCCGCCuGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 109658 | 0.71 | 0.713956 |
Target: 5'- -cGACUCCGGCaGGguccucCGGGCGCUcuccGACGAc -3' miRNA: 3'- ucCUGAGGCCG-CC------GCCUGUGA----UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 161826 | 0.71 | 0.713956 |
Target: 5'- cGGACggaCgGGCgGGCGGACGggGACGGg -3' miRNA: 3'- uCCUGa--GgCCG-CCGCCUGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 136487 | 0.7 | 0.732876 |
Target: 5'- cGGcGGCUCCGGCGGUcuGGACcCcAGCGu -3' miRNA: 3'- -UC-CUGAGGCCGCCG--CCUGuGaUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 27272 | 0.7 | 0.74222 |
Target: 5'- gAGGACgaagagaCCGGCGGCGc-CGCcGACGAc -3' miRNA: 3'- -UCCUGa------GGCCGCCGCcuGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 101812 | 0.7 | 0.760635 |
Target: 5'- -cGACUUCGGCGGUGGcgGgACUGGCa- -3' miRNA: 3'- ucCUGAGGCCGCCGCC--UgUGAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 123014 | 0.7 | 0.74222 |
Target: 5'- cGGuCUCCGGCGaGCGuGACGuCcGACGGc -3' miRNA: 3'- uCCuGAGGCCGC-CGC-CUGU-GaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 223073 | 0.7 | 0.748708 |
Target: 5'- gAGGACUCCGucgacgcagcuuccGaCGGCGGACGC---CGAg -3' miRNA: 3'- -UCCUGAGGC--------------C-GCCGCCUGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 11824 | 0.7 | 0.723452 |
Target: 5'- cGGACggagUCGGUGGCGGGguCgGACGGa -3' miRNA: 3'- uCCUGa---GGCCGCCGCCUguGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 134024 | 0.7 | 0.760635 |
Target: 5'- uGGGAagugcgaUGGCGGCGGAgGCU-GCGAu -3' miRNA: 3'- -UCCUgag----GCCGCCGCCUgUGAuUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 54503 | 0.7 | 0.76969 |
Target: 5'- gAGGACga-GGUGGUGGAgGCgguUGACGAg -3' miRNA: 3'- -UCCUGaggCCGCCGCCUgUG---AUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 79616 | 0.7 | 0.751475 |
Target: 5'- cGGACccgCUGcGCGcGCGGACGCU-GCGGg -3' miRNA: 3'- uCCUGa--GGC-CGC-CGCCUGUGAuUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 66645 | 0.7 | 0.732876 |
Target: 5'- -cGGCUUCGGCgcGGUGGGCGCccGGCGAg -3' miRNA: 3'- ucCUGAGGCCG--CCGCCUGUGa-UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 30706 | 0.7 | 0.723452 |
Target: 5'- -cGACgUCgaGGUGGCGGACGCguugAACGAc -3' miRNA: 3'- ucCUG-AGg-CCGCCGCCUGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 83448 | 0.7 | 0.731937 |
Target: 5'- cGGGCUCCGGCacgaGCGGcaccuuacccgcgACGCcGACGAu -3' miRNA: 3'- uCCUGAGGCCGc---CGCC-------------UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 28884 | 0.7 | 0.74222 |
Target: 5'- gAGGACUgCUGGCgccccgagucGGCGGACAa-GGCGGa -3' miRNA: 3'- -UCCUGA-GGCCG----------CCGCCUGUgaUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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