Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 223073 | 0.7 | 0.748708 |
Target: 5'- gAGGACUCCGucgacgcagcuuccGaCGGCGGACGC---CGAg -3' miRNA: 3'- -UCCUGAGGC--------------C-GCCGCCUGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 123014 | 0.7 | 0.74222 |
Target: 5'- cGGuCUCCGGCGaGCGuGACGuCcGACGGc -3' miRNA: 3'- uCCuGAGGCCGC-CGC-CUGU-GaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 27272 | 0.7 | 0.74222 |
Target: 5'- gAGGACgaagagaCCGGCGGCGc-CGCcGACGAc -3' miRNA: 3'- -UCCUGa------GGCCGCCGCcuGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 192991 | 0.69 | 0.813128 |
Target: 5'- gAGGACgaCGGUcgacucucuGGCGGGCGgUAGCGGu -3' miRNA: 3'- -UCCUGagGCCG---------CCGCCUGUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 194573 | 0.69 | 0.813128 |
Target: 5'- cGGGCUCCGaccagcacGaCGGUGGACACcu-CGAa -3' miRNA: 3'- uCCUGAGGC--------C-GCCGCCUGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 66744 | 0.69 | 0.778634 |
Target: 5'- cGGACcCCGGCGGCGu-CGCgacCGAa -3' miRNA: 3'- uCCUGaGGCCGCCGCcuGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 115076 | 0.69 | 0.804712 |
Target: 5'- uGGAggCCGGCGGCGccgACUGAUGAu -3' miRNA: 3'- uCCUgaGGCCGCCGCcugUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 116310 | 0.69 | 0.804712 |
Target: 5'- gAGGugUCggcguCGGCGGCGG-CAgcGGCGAc -3' miRNA: 3'- -UCCugAG-----GCCGCCGCCuGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 30764 | 0.69 | 0.813128 |
Target: 5'- cGGAaUCCgaGGuCGGCGGACGCgGACGc -3' miRNA: 3'- uCCUgAGG--CC-GCCGCCUGUGaUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 32231 | 0.69 | 0.804712 |
Target: 5'- cGGGCgCUGGUGaccaacGCGGACACcGGCGAu -3' miRNA: 3'- uCCUGaGGCCGC------CGCCUGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 68500 | 0.69 | 0.787457 |
Target: 5'- cAGG-CUCaggugaGGCGGCGGACGCa----- -3' miRNA: 3'- -UCCuGAGg-----CCGCCGCCUGUGauugcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99942 | 0.69 | 0.778634 |
Target: 5'- cGGACcgCCgcGGCGGCGGcUGCUGcuGCGAa -3' miRNA: 3'- uCCUGa-GG--CCGCCGCCuGUGAU--UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 205415 | 0.68 | 0.821394 |
Target: 5'- uGGcGCUUucgcaacaccggCGGCGGCGGugGCggcGACGAc -3' miRNA: 3'- uCC-UGAG------------GCCGCCGCCugUGa--UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 29964 | 0.68 | 0.829503 |
Target: 5'- gGGGACcggugCUGGCGGCGG-CGgcGGCGGc -3' miRNA: 3'- -UCCUGa----GGCCGCCGCCuGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 188620 | 0.68 | 0.829503 |
Target: 5'- cGGGACcgugucgCCGGCGGCGaGCACguaccacaccACGAc -3' miRNA: 3'- -UCCUGa------GGCCGCCGCcUGUGau--------UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 109121 | 0.68 | 0.837447 |
Target: 5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3' miRNA: 3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 184856 | 0.68 | 0.860231 |
Target: 5'- aGGGAUcgagucgagCgGGCGGCGGgACGCcgggAACGAg -3' miRNA: 3'- -UCCUGa--------GgCCGCCGCC-UGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 94727 | 0.68 | 0.821394 |
Target: 5'- cGGGCcgaagUCGGCGGCGGAgACgcguuucagcGCGAa -3' miRNA: 3'- uCCUGa----GGCCGCCGCCUgUGau--------UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 152309 | 0.68 | 0.845221 |
Target: 5'- cGGcGGCggugCCGGCGG-GGACGaUGACGGc -3' miRNA: 3'- -UC-CUGa---GGCCGCCgCCUGUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 194847 | 0.68 | 0.845221 |
Target: 5'- cAGGcCgaccaCGGCGGCGGACACg----- -3' miRNA: 3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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