Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 70467 | 0.67 | 0.900588 |
Target: 5'- gAGGACaccuUCaCGGCGGCguucagGGACACcgugaaGGCGAu -3' miRNA: 3'- -UCCUG----AG-GCCGCCG------CCUGUGa-----UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 173450 | 0.67 | 0.88132 |
Target: 5'- -cGACguaCCGGUGGCGG-CGCUcGACGc -3' miRNA: 3'- ucCUGa--GGCCGCCGCCuGUGA-UUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 127239 | 0.67 | 0.88132 |
Target: 5'- cGGGCg-CGGUGGCGGggaugaugaGCGCgAGCGAu -3' miRNA: 3'- uCCUGagGCCGCCGCC---------UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 19565 | 0.67 | 0.88132 |
Target: 5'- uGGGugU-CGGUGGCGG-CGgUAGCGu -3' miRNA: 3'- -UCCugAgGCCGCCGCCuGUgAUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 138548 | 0.67 | 0.867456 |
Target: 5'- cGGcACgagCGGCGGCGGAC--UGACGGc -3' miRNA: 3'- uCC-UGag-GCCGCCGCCUGugAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 17290 | 0.67 | 0.900588 |
Target: 5'- uGGugUCgGGUgcGGCGGAgAC-AACGGc -3' miRNA: 3'- uCCugAGgCCG--CCGCCUgUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 81642 | 0.66 | 0.910663 |
Target: 5'- cAGGACaucagcagcaugucUCUGGUGucGCuGACGCUGACGGa -3' miRNA: 3'- -UCCUG--------------AGGCCGC--CGcCUGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 30384 | 0.66 | 0.90659 |
Target: 5'- uGGACgugacCUGGCGgaucGCGGACAacgugGACGAg -3' miRNA: 3'- uCCUGa----GGCCGC----CGCCUGUga---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 68539 | 0.66 | 0.90659 |
Target: 5'- gAGGAgg-CGGCGGCGGAgG-UGACGGc -3' miRNA: 3'- -UCCUgagGCCGCCGCCUgUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 147091 | 0.66 | 0.911807 |
Target: 5'- cAGcGAUUaCCGGCGGaGGACuccgauuucgaguACUGACGGc -3' miRNA: 3'- -UC-CUGA-GGCCGCCgCCUG-------------UGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 192837 | 0.66 | 0.911807 |
Target: 5'- gAGGcagccGCUCucggugaCGGCGGCGGAguUGCUGACa- -3' miRNA: 3'- -UCC-----UGAG-------GCCGCCGCCU--GUGAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 174124 | 0.66 | 0.933344 |
Target: 5'- cGGACUCCGugagagguGCGGCaucggccuGGACGCcgGAuCGAc -3' miRNA: 3'- uCCUGAGGC--------CGCCG--------CCUGUGa-UU-GCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 131247 | 0.66 | 0.917945 |
Target: 5'- cGGucguCUCCguGGCGGCGGACGuuCUGcGCGc -3' miRNA: 3'- uCCu---GAGG--CCGCCGCCUGU--GAU-UGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 68154 | 0.66 | 0.932862 |
Target: 5'- uGGACgcggugaUCgCGGCGGCGcGCGC-GACGGa -3' miRNA: 3'- uCCUG-------AG-GCCGCCGCcUGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 135944 | 0.66 | 0.926913 |
Target: 5'- gGGGAuggcCUCUGGCGaucuuuucucgacaGCGGAaaACUGACGGa -3' miRNA: 3'- -UCCU----GAGGCCGC--------------CGCCUg-UGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 75799 | 0.66 | 0.923297 |
Target: 5'- gGGGGag-CGGCGGCGaGGCAcCUGGCa- -3' miRNA: 3'- -UCCUgagGCCGCCGC-CUGU-GAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 59706 | 0.66 | 0.917945 |
Target: 5'- aAGGGCgCCGaGCGGCcGcGGCGCacGGCGAc -3' miRNA: 3'- -UCCUGaGGC-CGCCG-C-CUGUGa-UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 35614 | 0.66 | 0.912376 |
Target: 5'- cGGGAUcCaCGGCGGCGG-CGgcGGCGGg -3' miRNA: 3'- -UCCUGaG-GCCGCCGCCuGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 109234 | 0.66 | 0.912376 |
Target: 5'- cGGGAga-CGGCGGCGGuagcggcguCGgUGACGAu -3' miRNA: 3'- -UCCUgagGCCGCCGCCu--------GUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 97928 | 0.66 | 0.912376 |
Target: 5'- cAGGACccgcaguuccUCCGGCGGCaG-CGCgu-CGAa -3' miRNA: 3'- -UCCUG----------AGGCCGCCGcCuGUGauuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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