miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 4681 1.09 0.003675
Target:  5'- gAGGACUCCGGCGGCGGACACUAACGAu -3'
miRNA:   3'- -UCCUGAGGCCGCCGCCUGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 28983 0.77 0.381288
Target:  5'- cGGAucaguCUCCGGCGGCGGugGCgagGCGc -3'
miRNA:   3'- uCCU-----GAGGCCGCCGCCugUGau-UGCu -5'
15928 5' -57.7 NC_004065.1 + 120548 0.76 0.397317
Target:  5'- cGGugUgCCGGCGGCGGucgGCGCgAGCGGg -3'
miRNA:   3'- uCCugA-GGCCGCCGCC---UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 128377 0.76 0.397317
Target:  5'- cGGGGCUUCGGCGGCGaGAgccgGCUGugGGg -3'
miRNA:   3'- -UCCUGAGGCCGCCGC-CUg---UGAUugCU- -5'
15928 5' -57.7 NC_004065.1 + 139905 0.76 0.430643
Target:  5'- cGGGGcCUCCGGcCGGCGG-CGCcAGCGGg -3'
miRNA:   3'- -UCCU-GAGGCC-GCCGCCuGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 119607 0.75 0.447909
Target:  5'- cAGGACgCCGGCGGCGGAgGa-GACGc -3'
miRNA:   3'- -UCCUGaGGCCGCCGCCUgUgaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 99394 0.75 0.456685
Target:  5'- uGGGCUgcCUGGCGGCGGGCGCguuGCu- -3'
miRNA:   3'- uCCUGA--GGCCGCCGCCUGUGau-UGcu -5'
15928 5' -57.7 NC_004065.1 + 131033 0.75 0.465552
Target:  5'- gGGGuGCUCUGGCGGCgccgGGAUACUAagaGCGGc -3'
miRNA:   3'- -UCC-UGAGGCCGCCG----CCUGUGAU---UGCU- -5'
15928 5' -57.7 NC_004065.1 + 38136 0.74 0.511149
Target:  5'- cGGACUUCGGCGuGCGcAUGCUGACGc -3'
miRNA:   3'- uCCUGAGGCCGC-CGCcUGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 19039 0.74 0.520496
Target:  5'- uGGACgaCGGCGGCGGugGCccacaucugUGACGAc -3'
miRNA:   3'- uCCUGagGCCGCCGCCugUG---------AUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 66628 0.73 0.557536
Target:  5'- cGGGCUgCGGCgcugcguGGCGGACgcGCUGACGc -3'
miRNA:   3'- uCCUGAgGCCG-------CCGCCUG--UGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 141614 0.73 0.558497
Target:  5'- cGGGCUCCGcugcCGGCGGugGCggcucGGCGAc -3'
miRNA:   3'- uCCUGAGGCc---GCCGCCugUGa----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 225376 0.73 0.587504
Target:  5'- uGGACgCCcGCGGCGGggGCGCUGGCGc -3'
miRNA:   3'- uCCUGaGGcCGCCGCC--UGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 136673 0.73 0.587504
Target:  5'- cGGGCgggucuggCCGGCGGCGGGCcgGCU--CGAg -3'
miRNA:   3'- uCCUGa-------GGCCGCCGCCUG--UGAuuGCU- -5'
15928 5' -57.7 NC_004065.1 + 168977 0.72 0.626563
Target:  5'- cGGugUCCGucagcGCGGCGGAC-CUcggaGGCGAc -3'
miRNA:   3'- uCCugAGGC-----CGCCGCCUGuGA----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 79315 0.72 0.645163
Target:  5'- uGGGCcucccaCCGGCGGCGGuucgugcGCGCggagGACGAg -3'
miRNA:   3'- uCCUGa-----GGCCGCCGCC-------UGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 163328 0.72 0.65592
Target:  5'- -uGACUCUGGUGGCGGACGgcAGCu- -3'
miRNA:   3'- ucCUGAGGCCGCCGCCUGUgaUUGcu -5'
15928 5' -57.7 NC_004065.1 + 82132 0.71 0.66568
Target:  5'- -uGACguaUCCGGCGGCgcGGACGCUGuaccuccugGCGAg -3'
miRNA:   3'- ucCUG---AGGCCGCCG--CCUGUGAU---------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 36118 0.71 0.66568
Target:  5'- cGGGGCcgcugCCGGCGGCGG-UugUggUGGu -3'
miRNA:   3'- -UCCUGa----GGCCGCCGCCuGugAuuGCU- -5'
15928 5' -57.7 NC_004065.1 + 145419 0.71 0.675416
Target:  5'- -aGACUCuCGGCGGCGG-CGCUuagggaaucGCGAu -3'
miRNA:   3'- ucCUGAG-GCCGCCGCCuGUGAu--------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.