miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 48096 0.71 0.675416
Target:  5'- cGGACcuguggCGGCGGCGGugGCggcGGCGGu -3'
miRNA:   3'- uCCUGag----GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 139873 0.71 0.685119
Target:  5'- cGGAg-CCGGCGGCaGGACG--GACGAg -3'
miRNA:   3'- uCCUgaGGCCGCCG-CCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 68754 0.71 0.694782
Target:  5'- cGGACUCgGacaucGCGGCGG-UGCUGGCGGc -3'
miRNA:   3'- uCCUGAGgC-----CGCCGCCuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 184803 0.71 0.704397
Target:  5'- gAGGACggugacgcaaCGGUGGCGGugGCggcAGCGGc -3'
miRNA:   3'- -UCCUGag--------GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 200851 0.71 0.704397
Target:  5'- uGGAgUUCGGCGucgacgggggcGCGGGCGgUGGCGAa -3'
miRNA:   3'- uCCUgAGGCCGC-----------CGCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 109658 0.71 0.713956
Target:  5'- -cGACUCCGGCaGGguccucCGGGCGCUcuccGACGAc -3'
miRNA:   3'- ucCUGAGGCCG-CC------GCCUGUGA----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 161826 0.71 0.713956
Target:  5'- cGGACggaCgGGCgGGCGGACGggGACGGg -3'
miRNA:   3'- uCCUGa--GgCCG-CCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30706 0.7 0.723452
Target:  5'- -cGACgUCgaGGUGGCGGACGCguugAACGAc -3'
miRNA:   3'- ucCUG-AGg-CCGCCGCCUGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 11824 0.7 0.723452
Target:  5'- cGGACggagUCGGUGGCGGGguCgGACGGa -3'
miRNA:   3'- uCCUGa---GGCCGCCGCCUguGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 83448 0.7 0.731937
Target:  5'- cGGGCUCCGGCacgaGCGGcaccuuacccgcgACGCcGACGAu -3'
miRNA:   3'- uCCUGAGGCCGc---CGCC-------------UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 136487 0.7 0.732876
Target:  5'- cGGcGGCUCCGGCGGUcuGGACcCcAGCGu -3'
miRNA:   3'- -UC-CUGAGGCCGCCG--CCUGuGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 66645 0.7 0.732876
Target:  5'- -cGGCUUCGGCgcGGUGGGCGCccGGCGAg -3'
miRNA:   3'- ucCUGAGGCCG--CCGCCUGUGa-UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 123014 0.7 0.74222
Target:  5'- cGGuCUCCGGCGaGCGuGACGuCcGACGGc -3'
miRNA:   3'- uCCuGAGGCCGC-CGC-CUGU-GaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 27272 0.7 0.74222
Target:  5'- gAGGACgaagagaCCGGCGGCGc-CGCcGACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcuGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 28884 0.7 0.74222
Target:  5'- gAGGACUgCUGGCgccccgagucGGCGGACAa-GGCGGa -3'
miRNA:   3'- -UCCUGA-GGCCG----------CCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 223073 0.7 0.748708
Target:  5'- gAGGACUCCGucgacgcagcuuccGaCGGCGGACGC---CGAg -3'
miRNA:   3'- -UCCUGAGGC--------------C-GCCGCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 79616 0.7 0.751475
Target:  5'- cGGACccgCUGcGCGcGCGGACGCU-GCGGg -3'
miRNA:   3'- uCCUGa--GGC-CGC-CGCCUGUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 134024 0.7 0.760635
Target:  5'- uGGGAagugcgaUGGCGGCGGAgGCU-GCGAu -3'
miRNA:   3'- -UCCUgag----GCCGCCGCCUgUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 101812 0.7 0.760635
Target:  5'- -cGACUUCGGCGGUGGcgGgACUGGCa- -3'
miRNA:   3'- ucCUGAGGCCGCCGCC--UgUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 120395 0.7 0.760635
Target:  5'- cAGGACgcccucgaCGGUGGUGGGCACc-GCGGc -3'
miRNA:   3'- -UCCUGag------GCCGCCGCCUGUGauUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.