miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 194847 0.68 0.845221
Target:  5'- cAGGcCgaccaCGGCGGCGGACACg----- -3'
miRNA:   3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 179679 0.68 0.852817
Target:  5'- gGGGGCUCgGgaucGCGGCGGugGCcacGCGu -3'
miRNA:   3'- -UCCUGAGgC----CGCCGCCugUGau-UGCu -5'
15928 5' -57.7 NC_004065.1 + 111701 0.68 0.860231
Target:  5'- uGGACgUCGGCGGUcc-CGCUGGCGAc -3'
miRNA:   3'- uCCUGaGGCCGCCGccuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 184856 0.68 0.860231
Target:  5'- aGGGAUcgagucgagCgGGCGGCGGgACGCcgggAACGAg -3'
miRNA:   3'- -UCCUGa--------GgCCGCCGCC-UGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 138548 0.67 0.867456
Target:  5'- cGGcACgagCGGCGGCGGAC--UGACGGc -3'
miRNA:   3'- uCC-UGag-GCCGCCGCCUGugAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 74585 0.67 0.867456
Target:  5'- aGGGACaguuggugccgUCGGUGGCGGugGCggcCGAg -3'
miRNA:   3'- -UCCUGa----------GGCCGCCGCCugUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 132017 0.67 0.867456
Target:  5'- --cACgcgCCGGCGGUGGugACccacGACGAa -3'
miRNA:   3'- uccUGa--GGCCGCCGCCugUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 189760 0.67 0.867456
Target:  5'- gAGGAUUgCGGUGGCggcaguGGACGCUGuuuggaauuCGAu -3'
miRNA:   3'- -UCCUGAgGCCGCCG------CCUGUGAUu--------GCU- -5'
15928 5' -57.7 NC_004065.1 + 173450 0.67 0.88132
Target:  5'- -cGACguaCCGGUGGCGG-CGCUcGACGc -3'
miRNA:   3'- ucCUGa--GGCCGCCGCCuGUGA-UUGCu -5'
15928 5' -57.7 NC_004065.1 + 120736 0.67 0.88132
Target:  5'- gGGGAUcgUUCGGCGuGacccaGGACACUGcugccGCGAg -3'
miRNA:   3'- -UCCUG--AGGCCGC-Cg----CCUGUGAU-----UGCU- -5'
15928 5' -57.7 NC_004065.1 + 19565 0.67 0.88132
Target:  5'- uGGGugU-CGGUGGCGG-CGgUAGCGu -3'
miRNA:   3'- -UCCugAgGCCGCCGCCuGUgAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 127239 0.67 0.88132
Target:  5'- cGGGCg-CGGUGGCGGggaugaugaGCGCgAGCGAu -3'
miRNA:   3'- uCCUGagGCCGCCGCC---------UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 67129 0.67 0.88795
Target:  5'- uGGACagCGGCGcGCgccuGGACGCgaucgcgGACGAg -3'
miRNA:   3'- uCCUGagGCCGC-CG----CCUGUGa------UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 99422 0.67 0.88795
Target:  5'- aGGGGC-CCGaGCGGCaGACGCcgccuCGAc -3'
miRNA:   3'- -UCCUGaGGC-CGCCGcCUGUGauu--GCU- -5'
15928 5' -57.7 NC_004065.1 + 94828 0.67 0.887951
Target:  5'- cGGGCcgUCGGCGGCGG-CGCccAACa- -3'
miRNA:   3'- uCCUGa-GGCCGCCGCCuGUGa-UUGcu -5'
15928 5' -57.7 NC_004065.1 + 203117 0.67 0.887951
Target:  5'- cGGGgUCCGGCGuGCGGuCG--AGCGGc -3'
miRNA:   3'- uCCUgAGGCCGC-CGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 79968 0.67 0.887951
Target:  5'- cGGGA--CCGGCaGGUGGACGCcaaGACGu -3'
miRNA:   3'- -UCCUgaGGCCG-CCGCCUGUGa--UUGCu -5'
15928 5' -57.7 NC_004065.1 + 28735 0.67 0.887951
Target:  5'- gAGGAgaCCgcGGUGGCGGACGCcuuccuGCGc -3'
miRNA:   3'- -UCCUgaGG--CCGCCGCCUGUGau----UGCu -5'
15928 5' -57.7 NC_004065.1 + 33647 0.67 0.894374
Target:  5'- cGGGGCgcgcuucgaccgUCCGGCGcGCGGGgagggcCGCU-GCGAg -3'
miRNA:   3'- -UCCUG------------AGGCCGC-CGCCU------GUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 45107 0.67 0.894374
Target:  5'- gGGGucCUCCaGCGGCGG-CGaaGGCGAc -3'
miRNA:   3'- -UCCu-GAGGcCGCCGCCuGUgaUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.