miRNA display CGI


Results 21 - 40 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 35614 0.66 0.912376
Target:  5'- cGGGAUcCaCGGCGGCGG-CGgcGGCGGg -3'
miRNA:   3'- -UCCUGaG-GCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 18186 0.66 0.912376
Target:  5'- cGGGACUcCCGuGCGauagccuuguccGCGGACuACUAcACGGa -3'
miRNA:   3'- -UCCUGA-GGC-CGC------------CGCCUG-UGAU-UGCU- -5'
15928 5' -57.7 NC_004065.1 + 109234 0.66 0.912376
Target:  5'- cGGGAga-CGGCGGCGGuagcggcguCGgUGACGAu -3'
miRNA:   3'- -UCCUgagGCCGCCGCCu--------GUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 111937 0.66 0.912376
Target:  5'- uGGGCgccgCCGucGCGGUGGACGauuACGGg -3'
miRNA:   3'- uCCUGa---GGC--CGCCGCCUGUgauUGCU- -5'
15928 5' -57.7 NC_004065.1 + 192837 0.66 0.911807
Target:  5'- gAGGcagccGCUCucggugaCGGCGGCGGAguUGCUGACa- -3'
miRNA:   3'- -UCC-----UGAG-------GCCGCCGCCU--GUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 147091 0.66 0.911807
Target:  5'- cAGcGAUUaCCGGCGGaGGACuccgauuucgaguACUGACGGc -3'
miRNA:   3'- -UC-CUGA-GGCCGCCgCCUG-------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 81642 0.66 0.910663
Target:  5'- cAGGACaucagcagcaugucUCUGGUGucGCuGACGCUGACGGa -3'
miRNA:   3'- -UCCUG--------------AGGCCGC--CGcCUGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 68539 0.66 0.90659
Target:  5'- gAGGAgg-CGGCGGCGGAgG-UGACGGc -3'
miRNA:   3'- -UCCUgagGCCGCCGCCUgUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30384 0.66 0.90659
Target:  5'- uGGACgugacCUGGCGgaucGCGGACAacgugGACGAg -3'
miRNA:   3'- uCCUGa----GGCCGC----CGCCUGUga---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 74848 0.66 0.906589
Target:  5'- aGGGGCgcagguugaGGCGGCGGugGuaGACGGg -3'
miRNA:   3'- -UCCUGagg------CCGCCGCCugUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 70467 0.67 0.900588
Target:  5'- gAGGACaccuUCaCGGCGGCguucagGGACACcgugaaGGCGAu -3'
miRNA:   3'- -UCCUG----AG-GCCGCCG------CCUGUGa-----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 17290 0.67 0.900588
Target:  5'- uGGugUCgGGUgcGGCGGAgAC-AACGGc -3'
miRNA:   3'- uCCugAGgCCG--CCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 105381 0.67 0.900588
Target:  5'- cGGACUCgcugaCGGcCGGCGaggaGGCGCUGACc- -3'
miRNA:   3'- uCCUGAG-----GCC-GCCGC----CUGUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 143331 0.67 0.900588
Target:  5'- gGGGGCgggGGCGGCGGcagggcgagggaACACUGGgGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCC------------UGUGAUUgCU- -5'
15928 5' -57.7 NC_004065.1 + 129980 0.67 0.896885
Target:  5'- -cGugUCCgcagaacgccgcgggGGCGGCGGACGa-GGCGAu -3'
miRNA:   3'- ucCugAGG---------------CCGCCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 33647 0.67 0.894374
Target:  5'- cGGGGCgcgcuucgaccgUCCGGCGcGCGGGgagggcCGCU-GCGAg -3'
miRNA:   3'- -UCCUG------------AGGCCGC-CGCCU------GUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 45107 0.67 0.894374
Target:  5'- gGGGucCUCCaGCGGCGG-CGaaGGCGAc -3'
miRNA:   3'- -UCCu-GAGGcCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 153618 0.67 0.894374
Target:  5'- -cGGCUCgGGCGGCGc-CACUcgGACGGc -3'
miRNA:   3'- ucCUGAGgCCGCCGCcuGUGA--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 94828 0.67 0.887951
Target:  5'- cGGGCcgUCGGCGGCGG-CGCccAACa- -3'
miRNA:   3'- uCCUGa-GGCCGCCGCCuGUGa-UUGcu -5'
15928 5' -57.7 NC_004065.1 + 203117 0.67 0.887951
Target:  5'- cGGGgUCCGGCGuGCGGuCG--AGCGGc -3'
miRNA:   3'- uCCUgAGGCCGC-CGCCuGUgaUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.