Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 94828 | 0.67 | 0.887951 |
Target: 5'- cGGGCcgUCGGCGGCGG-CGCccAACa- -3' miRNA: 3'- uCCUGa-GGCCGCCGCCuGUGa-UUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 203117 | 0.67 | 0.887951 |
Target: 5'- cGGGgUCCGGCGuGCGGuCG--AGCGGc -3' miRNA: 3'- uCCUgAGGCCGC-CGCCuGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99422 | 0.67 | 0.88795 |
Target: 5'- aGGGGC-CCGaGCGGCaGACGCcgccuCGAc -3' miRNA: 3'- -UCCUGaGGC-CGCCGcCUGUGauu--GCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 67129 | 0.67 | 0.88795 |
Target: 5'- uGGACagCGGCGcGCgccuGGACGCgaucgcgGACGAg -3' miRNA: 3'- uCCUGagGCCGC-CG----CCUGUGa------UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 127239 | 0.67 | 0.88132 |
Target: 5'- cGGGCg-CGGUGGCGGggaugaugaGCGCgAGCGAu -3' miRNA: 3'- uCCUGagGCCGCCGCC---------UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120736 | 0.67 | 0.88132 |
Target: 5'- gGGGAUcgUUCGGCGuGacccaGGACACUGcugccGCGAg -3' miRNA: 3'- -UCCUG--AGGCCGC-Cg----CCUGUGAU-----UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 173450 | 0.67 | 0.88132 |
Target: 5'- -cGACguaCCGGUGGCGG-CGCUcGACGc -3' miRNA: 3'- ucCUGa--GGCCGCCGCCuGUGA-UUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 19565 | 0.67 | 0.88132 |
Target: 5'- uGGGugU-CGGUGGCGG-CGgUAGCGu -3' miRNA: 3'- -UCCugAgGCCGCCGCCuGUgAUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 132017 | 0.67 | 0.867456 |
Target: 5'- --cACgcgCCGGCGGUGGugACccacGACGAa -3' miRNA: 3'- uccUGa--GGCCGCCGCCugUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 74585 | 0.67 | 0.867456 |
Target: 5'- aGGGACaguuggugccgUCGGUGGCGGugGCggcCGAg -3' miRNA: 3'- -UCCUGa----------GGCCGCCGCCugUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 189760 | 0.67 | 0.867456 |
Target: 5'- gAGGAUUgCGGUGGCggcaguGGACGCUGuuuggaauuCGAu -3' miRNA: 3'- -UCCUGAgGCCGCCG------CCUGUGAUu--------GCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 138548 | 0.67 | 0.867456 |
Target: 5'- cGGcACgagCGGCGGCGGAC--UGACGGc -3' miRNA: 3'- uCC-UGag-GCCGCCGCCUGugAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 111701 | 0.68 | 0.860231 |
Target: 5'- uGGACgUCGGCGGUcc-CGCUGGCGAc -3' miRNA: 3'- uCCUGaGGCCGCCGccuGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 184856 | 0.68 | 0.860231 |
Target: 5'- aGGGAUcgagucgagCgGGCGGCGGgACGCcgggAACGAg -3' miRNA: 3'- -UCCUGa--------GgCCGCCGCC-UGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 179679 | 0.68 | 0.852817 |
Target: 5'- gGGGGCUCgGgaucGCGGCGGugGCcacGCGu -3' miRNA: 3'- -UCCUGAGgC----CGCCGCCugUGau-UGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 152309 | 0.68 | 0.845221 |
Target: 5'- cGGcGGCggugCCGGCGG-GGACGaUGACGGc -3' miRNA: 3'- -UC-CUGa---GGCCGCCgCCUGUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 194847 | 0.68 | 0.845221 |
Target: 5'- cAGGcCgaccaCGGCGGCGGACACg----- -3' miRNA: 3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 211341 | 0.68 | 0.837447 |
Target: 5'- -cGACU-CGGUGGUGGGCgaauccgggaccGCUGGCGAa -3' miRNA: 3'- ucCUGAgGCCGCCGCCUG------------UGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 109121 | 0.68 | 0.837447 |
Target: 5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3' miRNA: 3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 105953 | 0.68 | 0.83666 |
Target: 5'- cGGGCUUCGcgcugaccgugguGCGGaCGGACACguuCGAg -3' miRNA: 3'- uCCUGAGGC-------------CGCC-GCCUGUGauuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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