Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 79315 | 0.72 | 0.645163 |
Target: 5'- uGGGCcucccaCCGGCGGCGGuucgugcGCGCggagGACGAg -3' miRNA: 3'- uCCUGa-----GGCCGCCGCC-------UGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 168977 | 0.72 | 0.626563 |
Target: 5'- cGGugUCCGucagcGCGGCGGAC-CUcggaGGCGAc -3' miRNA: 3'- uCCugAGGC-----CGCCGCCUGuGA----UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 136673 | 0.73 | 0.587504 |
Target: 5'- cGGGCgggucuggCCGGCGGCGGGCcgGCU--CGAg -3' miRNA: 3'- uCCUGa-------GGCCGCCGCCUG--UGAuuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 225376 | 0.73 | 0.587504 |
Target: 5'- uGGACgCCcGCGGCGGggGCGCUGGCGc -3' miRNA: 3'- uCCUGaGGcCGCCGCC--UGUGAUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 141614 | 0.73 | 0.558497 |
Target: 5'- cGGGCUCCGcugcCGGCGGugGCggcucGGCGAc -3' miRNA: 3'- uCCUGAGGCc---GCCGCCugUGa----UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 66628 | 0.73 | 0.557536 |
Target: 5'- cGGGCUgCGGCgcugcguGGCGGACgcGCUGACGc -3' miRNA: 3'- uCCUGAgGCCG-------CCGCCUG--UGAUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 19039 | 0.74 | 0.520496 |
Target: 5'- uGGACgaCGGCGGCGGugGCccacaucugUGACGAc -3' miRNA: 3'- uCCUGagGCCGCCGCCugUG---------AUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 38136 | 0.74 | 0.511149 |
Target: 5'- cGGACUUCGGCGuGCGcAUGCUGACGc -3' miRNA: 3'- uCCUGAGGCCGC-CGCcUGUGAUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 131033 | 0.75 | 0.465552 |
Target: 5'- gGGGuGCUCUGGCGGCgccgGGAUACUAagaGCGGc -3' miRNA: 3'- -UCC-UGAGGCCGCCG----CCUGUGAU---UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99394 | 0.75 | 0.456685 |
Target: 5'- uGGGCUgcCUGGCGGCGGGCGCguuGCu- -3' miRNA: 3'- uCCUGA--GGCCGCCGCCUGUGau-UGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 119607 | 0.75 | 0.447909 |
Target: 5'- cAGGACgCCGGCGGCGGAgGa-GACGc -3' miRNA: 3'- -UCCUGaGGCCGCCGCCUgUgaUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 139905 | 0.76 | 0.430643 |
Target: 5'- cGGGGcCUCCGGcCGGCGG-CGCcAGCGGg -3' miRNA: 3'- -UCCU-GAGGCC-GCCGCCuGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 128377 | 0.76 | 0.397317 |
Target: 5'- cGGGGCUUCGGCGGCGaGAgccgGCUGugGGg -3' miRNA: 3'- -UCCUGAGGCCGCCGC-CUg---UGAUugCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120548 | 0.76 | 0.397317 |
Target: 5'- cGGugUgCCGGCGGCGGucgGCGCgAGCGGg -3' miRNA: 3'- uCCugA-GGCCGCCGCC---UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 28983 | 0.77 | 0.381288 |
Target: 5'- cGGAucaguCUCCGGCGGCGGugGCgagGCGc -3' miRNA: 3'- uCCU-----GAGGCCGCCGCCugUGau-UGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 4681 | 1.09 | 0.003675 |
Target: 5'- gAGGACUCCGGCGGCGGACACUAACGAu -3' miRNA: 3'- -UCCUGAGGCCGCCGCCUGUGAUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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