miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 4681 1.09 0.003675
Target:  5'- gAGGACUCCGGCGGCGGACACUAACGAu -3'
miRNA:   3'- -UCCUGAGGCCGCCGCCUGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 7361 0.66 0.923297
Target:  5'- aAGGACUaCUGuCGGacgugGGGCGCUGACGc -3'
miRNA:   3'- -UCCUGA-GGCcGCCg----CCUGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 11824 0.7 0.723452
Target:  5'- cGGACggagUCGGUGGCGGGguCgGACGGa -3'
miRNA:   3'- uCCUGa---GGCCGCCGCCUguGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 17290 0.67 0.900588
Target:  5'- uGGugUCgGGUgcGGCGGAgAC-AACGGc -3'
miRNA:   3'- uCCugAGgCCG--CCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 18186 0.66 0.912376
Target:  5'- cGGGACUcCCGuGCGauagccuuguccGCGGACuACUAcACGGa -3'
miRNA:   3'- -UCCUGA-GGC-CGC------------CGCCUG-UGAU-UGCU- -5'
15928 5' -57.7 NC_004065.1 + 19039 0.74 0.520496
Target:  5'- uGGACgaCGGCGGCGGugGCccacaucugUGACGAc -3'
miRNA:   3'- uCCUGagGCCGCCGCCugUG---------AUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 19565 0.67 0.88132
Target:  5'- uGGGugU-CGGUGGCGG-CGgUAGCGu -3'
miRNA:   3'- -UCCugAgGCCGCCGCCuGUgAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 27272 0.7 0.74222
Target:  5'- gAGGACgaagagaCCGGCGGCGc-CGCcGACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcuGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 28735 0.67 0.887951
Target:  5'- gAGGAgaCCgcGGUGGCGGACGCcuuccuGCGc -3'
miRNA:   3'- -UCCUgaGG--CCGCCGCCUGUGau----UGCu -5'
15928 5' -57.7 NC_004065.1 + 28884 0.7 0.74222
Target:  5'- gAGGACUgCUGGCgccccgagucGGCGGACAa-GGCGGa -3'
miRNA:   3'- -UCCUGA-GGCCG----------CCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 28983 0.77 0.381288
Target:  5'- cGGAucaguCUCCGGCGGCGGugGCgagGCGc -3'
miRNA:   3'- uCCU-----GAGGCCGCCGCCugUGau-UGCu -5'
15928 5' -57.7 NC_004065.1 + 29964 0.68 0.829503
Target:  5'- gGGGACcggugCUGGCGGCGG-CGgcGGCGGc -3'
miRNA:   3'- -UCCUGa----GGCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30076 0.66 0.92843
Target:  5'- cGGGACcgCC-GUGGCGGagcgcGCGCUGAUGu -3'
miRNA:   3'- -UCCUGa-GGcCGCCGCC-----UGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 30384 0.66 0.90659
Target:  5'- uGGACgugacCUGGCGgaucGCGGACAacgugGACGAg -3'
miRNA:   3'- uCCUGa----GGCCGC----CGCCUGUga---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30706 0.7 0.723452
Target:  5'- -cGACgUCgaGGUGGCGGACGCguugAACGAc -3'
miRNA:   3'- ucCUG-AGg-CCGCCGCCUGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30764 0.69 0.813128
Target:  5'- cGGAaUCCgaGGuCGGCGGACGCgGACGc -3'
miRNA:   3'- uCCUgAGG--CC-GCCGCCUGUGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 32231 0.69 0.804712
Target:  5'- cGGGCgCUGGUGaccaacGCGGACACcGGCGAu -3'
miRNA:   3'- uCCUGaGGCCGC------CGCCUGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 33647 0.67 0.894374
Target:  5'- cGGGGCgcgcuucgaccgUCCGGCGcGCGGGgagggcCGCU-GCGAg -3'
miRNA:   3'- -UCCUG------------AGGCCGC-CGCCU------GUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 34431 0.66 0.912376
Target:  5'- uGGACUCCacggaucgcacGGcCGGgGGACGCgaauccuGCGGc -3'
miRNA:   3'- uCCUGAGG-----------CC-GCCgCCUGUGau-----UGCU- -5'
15928 5' -57.7 NC_004065.1 + 35614 0.66 0.912376
Target:  5'- cGGGAUcCaCGGCGGCGG-CGgcGGCGGg -3'
miRNA:   3'- -UCCUGaG-GCCGCCGCCuGUgaUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.