miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 36118 0.71 0.66568
Target:  5'- cGGGGCcgcugCCGGCGGCGG-UugUggUGGu -3'
miRNA:   3'- -UCCUGa----GGCCGCCGCCuGugAuuGCU- -5'
15928 5' -57.7 NC_004065.1 + 38136 0.74 0.511149
Target:  5'- cGGACUUCGGCGuGCGcAUGCUGACGc -3'
miRNA:   3'- uCCUGAGGCCGC-CGCcUGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 45107 0.67 0.894374
Target:  5'- gGGGucCUCCaGCGGCGG-CGaaGGCGAc -3'
miRNA:   3'- -UCCu-GAGGcCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 48096 0.71 0.675416
Target:  5'- cGGACcuguggCGGCGGCGGugGCggcGGCGGu -3'
miRNA:   3'- uCCUGag----GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 54503 0.7 0.76969
Target:  5'- gAGGACga-GGUGGUGGAgGCgguUGACGAg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUG---AUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 59706 0.66 0.917945
Target:  5'- aAGGGCgCCGaGCGGCcGcGGCGCacGGCGAc -3'
miRNA:   3'- -UCCUGaGGC-CGCCG-C-CUGUGa-UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 63833 0.66 0.933344
Target:  5'- uGGcuCUCCGGCaGUGGAUGCUcaGACa- -3'
miRNA:   3'- uCCu-GAGGCCGcCGCCUGUGA--UUGcu -5'
15928 5' -57.7 NC_004065.1 + 66628 0.73 0.557536
Target:  5'- cGGGCUgCGGCgcugcguGGCGGACgcGCUGACGc -3'
miRNA:   3'- uCCUGAgGCCG-------CCGCCUG--UGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 66645 0.7 0.732876
Target:  5'- -cGGCUUCGGCgcGGUGGGCGCccGGCGAg -3'
miRNA:   3'- ucCUGAGGCCG--CCGCCUGUGa-UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 66744 0.69 0.778634
Target:  5'- cGGACcCCGGCGGCGu-CGCgacCGAa -3'
miRNA:   3'- uCCUGaGGCCGCCGCcuGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 67129 0.67 0.88795
Target:  5'- uGGACagCGGCGcGCgccuGGACGCgaucgcgGACGAg -3'
miRNA:   3'- uCCUGagGCCGC-CG----CCUGUGa------UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 68154 0.66 0.932862
Target:  5'- uGGACgcggugaUCgCGGCGGCGcGCGC-GACGGa -3'
miRNA:   3'- uCCUG-------AG-GCCGCCGCcUGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 68500 0.69 0.787457
Target:  5'- cAGG-CUCaggugaGGCGGCGGACGCa----- -3'
miRNA:   3'- -UCCuGAGg-----CCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 68539 0.66 0.90659
Target:  5'- gAGGAgg-CGGCGGCGGAgG-UGACGGc -3'
miRNA:   3'- -UCCUgagGCCGCCGCCUgUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 68754 0.71 0.694782
Target:  5'- cGGACUCgGacaucGCGGCGG-UGCUGGCGGc -3'
miRNA:   3'- uCCUGAGgC-----CGCCGCCuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 70467 0.67 0.900588
Target:  5'- gAGGACaccuUCaCGGCGGCguucagGGACACcgugaaGGCGAu -3'
miRNA:   3'- -UCCUG----AG-GCCGCCG------CCUGUGa-----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 74585 0.67 0.867456
Target:  5'- aGGGACaguuggugccgUCGGUGGCGGugGCggcCGAg -3'
miRNA:   3'- -UCCUGa----------GGCCGCCGCCugUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 74848 0.66 0.906589
Target:  5'- aGGGGCgcagguugaGGCGGCGGugGuaGACGGg -3'
miRNA:   3'- -UCCUGagg------CCGCCGCCugUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 75799 0.66 0.923297
Target:  5'- gGGGGag-CGGCGGCGaGGCAcCUGGCa- -3'
miRNA:   3'- -UCCUgagGCCGCCGC-CUGU-GAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 78856 0.7 0.76969
Target:  5'- aAGGGCggCCGGCGcgccagcucGCGGuCGCcGACGAu -3'
miRNA:   3'- -UCCUGa-GGCCGC---------CGCCuGUGaUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.