miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 79315 0.72 0.645163
Target:  5'- uGGGCcucccaCCGGCGGCGGuucgugcGCGCggagGACGAg -3'
miRNA:   3'- uCCUGa-----GGCCGCCGCC-------UGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 79616 0.7 0.751475
Target:  5'- cGGACccgCUGcGCGcGCGGACGCU-GCGGg -3'
miRNA:   3'- uCCUGa--GGC-CGC-CGCCUGUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 79968 0.67 0.887951
Target:  5'- cGGGA--CCGGCaGGUGGACGCcaaGACGu -3'
miRNA:   3'- -UCCUgaGGCCG-CCGCCUGUGa--UUGCu -5'
15928 5' -57.7 NC_004065.1 + 81642 0.66 0.910663
Target:  5'- cAGGACaucagcagcaugucUCUGGUGucGCuGACGCUGACGGa -3'
miRNA:   3'- -UCCUG--------------AGGCCGC--CGcCUGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 82132 0.71 0.66568
Target:  5'- -uGACguaUCCGGCGGCgcGGACGCUGuaccuccugGCGAg -3'
miRNA:   3'- ucCUG---AGGCCGCCG--CCUGUGAU---------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 83448 0.7 0.731937
Target:  5'- cGGGCUCCGGCacgaGCGGcaccuuacccgcgACGCcGACGAu -3'
miRNA:   3'- uCCUGAGGCCGc---CGCC-------------UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 90982 0.66 0.912376
Target:  5'- cGGAaaacCUCUGGCGGaCGGACuGC-AGCGu -3'
miRNA:   3'- uCCU----GAGGCCGCC-GCCUG-UGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 94727 0.68 0.821394
Target:  5'- cGGGCcgaagUCGGCGGCGGAgACgcguuucagcGCGAa -3'
miRNA:   3'- uCCUGa----GGCCGCCGCCUgUGau--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 94828 0.67 0.887951
Target:  5'- cGGGCcgUCGGCGGCGG-CGCccAACa- -3'
miRNA:   3'- uCCUGa-GGCCGCCGCCuGUGa-UUGcu -5'
15928 5' -57.7 NC_004065.1 + 97928 0.66 0.912376
Target:  5'- cAGGACccgcaguuccUCCGGCGGCaG-CGCgu-CGAa -3'
miRNA:   3'- -UCCUG----------AGGCCGCCGcCuGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 99394 0.75 0.456685
Target:  5'- uGGGCUgcCUGGCGGCGGGCGCguuGCu- -3'
miRNA:   3'- uCCUGA--GGCCGCCGCCUGUGau-UGcu -5'
15928 5' -57.7 NC_004065.1 + 99422 0.67 0.88795
Target:  5'- aGGGGC-CCGaGCGGCaGACGCcgccuCGAc -3'
miRNA:   3'- -UCCUGaGGC-CGCCGcCUGUGauu--GCU- -5'
15928 5' -57.7 NC_004065.1 + 99658 0.7 0.76969
Target:  5'- uGGAgaagCCGGCGGCGcGGCGCcGACa- -3'
miRNA:   3'- uCCUga--GGCCGCCGC-CUGUGaUUGcu -5'
15928 5' -57.7 NC_004065.1 + 99942 0.69 0.778634
Target:  5'- cGGACcgCCgcGGCGGCGGcUGCUGcuGCGAa -3'
miRNA:   3'- uCCUGa-GG--CCGCCGCCuGUGAU--UGCU- -5'
15928 5' -57.7 NC_004065.1 + 101812 0.7 0.760635
Target:  5'- -cGACUUCGGCGGUGGcgGgACUGGCa- -3'
miRNA:   3'- ucCUGAGGCCGCCGCC--UgUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 105381 0.67 0.900588
Target:  5'- cGGACUCgcugaCGGcCGGCGaggaGGCGCUGACc- -3'
miRNA:   3'- uCCUGAG-----GCC-GCCGC----CUGUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 105953 0.68 0.83666
Target:  5'- cGGGCUUCGcgcugaccgugguGCGGaCGGACACguuCGAg -3'
miRNA:   3'- uCCUGAGGC-------------CGCC-GCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 109121 0.68 0.837447
Target:  5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 109234 0.66 0.912376
Target:  5'- cGGGAga-CGGCGGCGGuagcggcguCGgUGACGAu -3'
miRNA:   3'- -UCCUgagGCCGCCGCCu--------GUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 109658 0.71 0.713956
Target:  5'- -cGACUCCGGCaGGguccucCGGGCGCUcuccGACGAc -3'
miRNA:   3'- ucCUGAGGCCG-CC------GCCUGUGA----UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.