miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 110166 0.66 0.926913
Target:  5'- uGGACUCCcGCaccucgucgauGGUGGGCucgacgaagauccuGCUGGCGAg -3'
miRNA:   3'- uCCUGAGGcCG-----------CCGCCUG--------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 111701 0.68 0.860231
Target:  5'- uGGACgUCGGCGGUcc-CGCUGGCGAc -3'
miRNA:   3'- uCCUGaGGCCGCCGccuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 111937 0.66 0.912376
Target:  5'- uGGGCgccgCCGucGCGGUGGACGauuACGGg -3'
miRNA:   3'- uCCUGa---GGC--CGCCGCCUGUgauUGCU- -5'
15928 5' -57.7 NC_004065.1 + 115076 0.69 0.804712
Target:  5'- uGGAggCCGGCGGCGccgACUGAUGAu -3'
miRNA:   3'- uCCUgaGGCCGCCGCcugUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 116310 0.69 0.804712
Target:  5'- gAGGugUCggcguCGGCGGCGG-CAgcGGCGAc -3'
miRNA:   3'- -UCCugAG-----GCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 118251 0.66 0.92742
Target:  5'- cGGACgcguggagcucgCCGGCGGCcucGACGuacUUGACGAc -3'
miRNA:   3'- uCCUGa-----------GGCCGCCGc--CUGU---GAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 119607 0.75 0.447909
Target:  5'- cAGGACgCCGGCGGCGGAgGa-GACGc -3'
miRNA:   3'- -UCCUGaGGCCGCCGCCUgUgaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 120105 0.66 0.92843
Target:  5'- cGGGACg-CGaCGGCGGcCGCggcgGACGAg -3'
miRNA:   3'- -UCCUGagGCcGCCGCCuGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 120395 0.7 0.760635
Target:  5'- cAGGACgcccucgaCGGUGGUGGGCACc-GCGGc -3'
miRNA:   3'- -UCCUGag------GCCGCCGCCUGUGauUGCU- -5'
15928 5' -57.7 NC_004065.1 + 120458 0.66 0.917945
Target:  5'- cAGGAgaCaGGCGGCcaccucgaGGuCGCUGACGAc -3'
miRNA:   3'- -UCCUgaGgCCGCCG--------CCuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 120548 0.76 0.397317
Target:  5'- cGGugUgCCGGCGGCGGucgGCGCgAGCGGg -3'
miRNA:   3'- uCCugA-GGCCGCCGCC---UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 120736 0.67 0.88132
Target:  5'- gGGGAUcgUUCGGCGuGacccaGGACACUGcugccGCGAg -3'
miRNA:   3'- -UCCUG--AGGCCGC-Cg----CCUGUGAU-----UGCU- -5'
15928 5' -57.7 NC_004065.1 + 123014 0.7 0.74222
Target:  5'- cGGuCUCCGGCGaGCGuGACGuCcGACGGc -3'
miRNA:   3'- uCCuGAGGCCGC-CGC-CUGU-GaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 127239 0.67 0.88132
Target:  5'- cGGGCg-CGGUGGCGGggaugaugaGCGCgAGCGAu -3'
miRNA:   3'- uCCUGagGCCGCCGCC---------UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 128377 0.76 0.397317
Target:  5'- cGGGGCUUCGGCGGCGaGAgccgGCUGugGGg -3'
miRNA:   3'- -UCCUGAGGCCGCCGC-CUg---UGAUugCU- -5'
15928 5' -57.7 NC_004065.1 + 129980 0.67 0.896885
Target:  5'- -cGugUCCgcagaacgccgcgggGGCGGCGGACGa-GGCGAu -3'
miRNA:   3'- ucCugAGG---------------CCGCCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 131033 0.75 0.465552
Target:  5'- gGGGuGCUCUGGCGGCgccgGGAUACUAagaGCGGc -3'
miRNA:   3'- -UCC-UGAGGCCGCCG----CCUGUGAU---UGCU- -5'
15928 5' -57.7 NC_004065.1 + 131247 0.66 0.917945
Target:  5'- cGGucguCUCCguGGCGGCGGACGuuCUGcGCGc -3'
miRNA:   3'- uCCu---GAGG--CCGCCGCCUGU--GAU-UGCu -5'
15928 5' -57.7 NC_004065.1 + 132017 0.67 0.867456
Target:  5'- --cACgcgCCGGCGGUGGugACccacGACGAa -3'
miRNA:   3'- uccUGa--GGCCGCCGCCugUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 134024 0.7 0.760635
Target:  5'- uGGGAagugcgaUGGCGGCGGAgGCU-GCGAu -3'
miRNA:   3'- -UCCUgag----GCCGCCGCCUgUGAuUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.