miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 225376 0.73 0.587504
Target:  5'- uGGACgCCcGCGGCGGggGCGCUGGCGc -3'
miRNA:   3'- uCCUGaGGcCGCCGCC--UGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 223073 0.7 0.748708
Target:  5'- gAGGACUCCGucgacgcagcuuccGaCGGCGGACGC---CGAg -3'
miRNA:   3'- -UCCUGAGGC--------------C-GCCGCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 211341 0.68 0.837447
Target:  5'- -cGACU-CGGUGGUGGGCgaauccgggaccGCUGGCGAa -3'
miRNA:   3'- ucCUGAgGCCGCCGCCUG------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 205415 0.68 0.821394
Target:  5'- uGGcGCUUucgcaacaccggCGGCGGCGGugGCggcGACGAc -3'
miRNA:   3'- uCC-UGAG------------GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 203117 0.67 0.887951
Target:  5'- cGGGgUCCGGCGuGCGGuCG--AGCGGc -3'
miRNA:   3'- uCCUgAGGCCGC-CGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 200851 0.71 0.704397
Target:  5'- uGGAgUUCGGCGucgacgggggcGCGGGCGgUGGCGAa -3'
miRNA:   3'- uCCUgAGGCCGC-----------CGCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 194847 0.68 0.845221
Target:  5'- cAGGcCgaccaCGGCGGCGGACACg----- -3'
miRNA:   3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 194573 0.69 0.813128
Target:  5'- cGGGCUCCGaccagcacGaCGGUGGACACcu-CGAa -3'
miRNA:   3'- uCCUGAGGC--------C-GCCGCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 192991 0.69 0.813128
Target:  5'- gAGGACgaCGGUcgacucucuGGCGGGCGgUAGCGGu -3'
miRNA:   3'- -UCCUGagGCCG---------CCGCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 192837 0.66 0.911807
Target:  5'- gAGGcagccGCUCucggugaCGGCGGCGGAguUGCUGACa- -3'
miRNA:   3'- -UCC-----UGAG-------GCCGCCGCCU--GUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 189760 0.67 0.867456
Target:  5'- gAGGAUUgCGGUGGCggcaguGGACGCUGuuuggaauuCGAu -3'
miRNA:   3'- -UCCUGAgGCCGCCG------CCUGUGAUu--------GCU- -5'
15928 5' -57.7 NC_004065.1 + 188620 0.68 0.829503
Target:  5'- cGGGACcgugucgCCGGCGGCGaGCACguaccacaccACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcUGUGau--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 184856 0.68 0.860231
Target:  5'- aGGGAUcgagucgagCgGGCGGCGGgACGCcgggAACGAg -3'
miRNA:   3'- -UCCUGa--------GgCCGCCGCC-UGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 184803 0.71 0.704397
Target:  5'- gAGGACggugacgcaaCGGUGGCGGugGCggcAGCGGc -3'
miRNA:   3'- -UCCUGag--------GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 181847 0.66 0.912376
Target:  5'- aAGGGCUUCcGCGGUaucGGACGCcu-CGAg -3'
miRNA:   3'- -UCCUGAGGcCGCCG---CCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 179679 0.68 0.852817
Target:  5'- gGGGGCUCgGgaucGCGGCGGugGCcacGCGu -3'
miRNA:   3'- -UCCUGAGgC----CGCCGCCugUGau-UGCu -5'
15928 5' -57.7 NC_004065.1 + 176331 0.66 0.917945
Target:  5'- gAGGGCggUCgGGCGGCG-ACACgaucaucgGAUGAc -3'
miRNA:   3'- -UCCUG--AGgCCGCCGCcUGUGa-------UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 174124 0.66 0.933344
Target:  5'- cGGACUCCGugagagguGCGGCaucggccuGGACGCcgGAuCGAc -3'
miRNA:   3'- uCCUGAGGC--------CGCCG--------CCUGUGa-UU-GCU- -5'
15928 5' -57.7 NC_004065.1 + 173450 0.67 0.88132
Target:  5'- -cGACguaCCGGUGGCGG-CGCUcGACGc -3'
miRNA:   3'- ucCUGa--GGCCGCCGCCuGUGA-UUGCu -5'
15928 5' -57.7 NC_004065.1 + 168977 0.72 0.626563
Target:  5'- cGGugUCCGucagcGCGGCGGAC-CUcggaGGCGAc -3'
miRNA:   3'- uCCugAGGC-----CGCCGCCUGuGA----UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.