miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 163328 0.72 0.65592
Target:  5'- -uGACUCUGGUGGCGGACGgcAGCu- -3'
miRNA:   3'- ucCUGAGGCCGCCGCCUGUgaUUGcu -5'
15928 5' -57.7 NC_004065.1 + 161826 0.71 0.713956
Target:  5'- cGGACggaCgGGCgGGCGGACGggGACGGg -3'
miRNA:   3'- uCCUGa--GgCCG-CCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 155354 0.66 0.917945
Target:  5'- cGGACcCUGcGCuacGGCGGACGCgccGCGGu -3'
miRNA:   3'- uCCUGaGGC-CG---CCGCCUGUGau-UGCU- -5'
15928 5' -57.7 NC_004065.1 + 153618 0.67 0.894374
Target:  5'- -cGGCUCgGGCGGCGc-CACUcgGACGGc -3'
miRNA:   3'- ucCUGAGgCCGCCGCcuGUGA--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 152309 0.68 0.845221
Target:  5'- cGGcGGCggugCCGGCGG-GGACGaUGACGGc -3'
miRNA:   3'- -UC-CUGa---GGCCGCCgCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 148868 0.66 0.923297
Target:  5'- aGGaGGCggCGGCGGgGGGCGaggggGACGAa -3'
miRNA:   3'- -UC-CUGagGCCGCCgCCUGUga---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 147091 0.66 0.911807
Target:  5'- cAGcGAUUaCCGGCGGaGGACuccgauuucgaguACUGACGGc -3'
miRNA:   3'- -UC-CUGA-GGCCGCCgCCUG-------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 145419 0.71 0.675416
Target:  5'- -aGACUCuCGGCGGCGG-CGCUuagggaaucGCGAu -3'
miRNA:   3'- ucCUGAG-GCCGCCGCCuGUGAu--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 143331 0.67 0.900588
Target:  5'- gGGGGCgggGGCGGCGGcagggcgagggaACACUGGgGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCC------------UGUGAUUgCU- -5'
15928 5' -57.7 NC_004065.1 + 141614 0.73 0.558497
Target:  5'- cGGGCUCCGcugcCGGCGGugGCggcucGGCGAc -3'
miRNA:   3'- uCCUGAGGCc---GCCGCCugUGa----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 139905 0.76 0.430643
Target:  5'- cGGGGcCUCCGGcCGGCGG-CGCcAGCGGg -3'
miRNA:   3'- -UCCU-GAGGCC-GCCGCCuGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 139873 0.71 0.685119
Target:  5'- cGGAg-CCGGCGGCaGGACG--GACGAg -3'
miRNA:   3'- uCCUgaGGCCGCCG-CCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 138548 0.67 0.867456
Target:  5'- cGGcACgagCGGCGGCGGAC--UGACGGc -3'
miRNA:   3'- uCC-UGag-GCCGCCGCCUGugAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 136673 0.73 0.587504
Target:  5'- cGGGCgggucuggCCGGCGGCGGGCcgGCU--CGAg -3'
miRNA:   3'- uCCUGa-------GGCCGCCGCCUG--UGAuuGCU- -5'
15928 5' -57.7 NC_004065.1 + 136487 0.7 0.732876
Target:  5'- cGGcGGCUCCGGCGGUcuGGACcCcAGCGu -3'
miRNA:   3'- -UC-CUGAGGCCGCCG--CCUGuGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 135944 0.66 0.926913
Target:  5'- gGGGAuggcCUCUGGCGaucuuuucucgacaGCGGAaaACUGACGGa -3'
miRNA:   3'- -UCCU----GAGGCCGC--------------CGCCUg-UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 134024 0.7 0.760635
Target:  5'- uGGGAagugcgaUGGCGGCGGAgGCU-GCGAu -3'
miRNA:   3'- -UCCUgag----GCCGCCGCCUgUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 132017 0.67 0.867456
Target:  5'- --cACgcgCCGGCGGUGGugACccacGACGAa -3'
miRNA:   3'- uccUGa--GGCCGCCGCCugUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 131247 0.66 0.917945
Target:  5'- cGGucguCUCCguGGCGGCGGACGuuCUGcGCGc -3'
miRNA:   3'- uCCu---GAGG--CCGCCGCCUGU--GAU-UGCu -5'
15928 5' -57.7 NC_004065.1 + 131033 0.75 0.465552
Target:  5'- gGGGuGCUCUGGCGGCgccgGGAUACUAagaGCGGc -3'
miRNA:   3'- -UCC-UGAGGCCGCCG----CCUGUGAU---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.