Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 129980 | 0.67 | 0.896885 |
Target: 5'- -cGugUCCgcagaacgccgcgggGGCGGCGGACGa-GGCGAu -3' miRNA: 3'- ucCugAGG---------------CCGCCGCCUGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 128377 | 0.76 | 0.397317 |
Target: 5'- cGGGGCUUCGGCGGCGaGAgccgGCUGugGGg -3' miRNA: 3'- -UCCUGAGGCCGCCGC-CUg---UGAUugCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 127239 | 0.67 | 0.88132 |
Target: 5'- cGGGCg-CGGUGGCGGggaugaugaGCGCgAGCGAu -3' miRNA: 3'- uCCUGagGCCGCCGCC---------UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 123014 | 0.7 | 0.74222 |
Target: 5'- cGGuCUCCGGCGaGCGuGACGuCcGACGGc -3' miRNA: 3'- uCCuGAGGCCGC-CGC-CUGU-GaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120736 | 0.67 | 0.88132 |
Target: 5'- gGGGAUcgUUCGGCGuGacccaGGACACUGcugccGCGAg -3' miRNA: 3'- -UCCUG--AGGCCGC-Cg----CCUGUGAU-----UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120548 | 0.76 | 0.397317 |
Target: 5'- cGGugUgCCGGCGGCGGucgGCGCgAGCGGg -3' miRNA: 3'- uCCugA-GGCCGCCGCC---UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120458 | 0.66 | 0.917945 |
Target: 5'- cAGGAgaCaGGCGGCcaccucgaGGuCGCUGACGAc -3' miRNA: 3'- -UCCUgaGgCCGCCG--------CCuGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120395 | 0.7 | 0.760635 |
Target: 5'- cAGGACgcccucgaCGGUGGUGGGCACc-GCGGc -3' miRNA: 3'- -UCCUGag------GCCGCCGCCUGUGauUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 120105 | 0.66 | 0.92843 |
Target: 5'- cGGGACg-CGaCGGCGGcCGCggcgGACGAg -3' miRNA: 3'- -UCCUGagGCcGCCGCCuGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 119607 | 0.75 | 0.447909 |
Target: 5'- cAGGACgCCGGCGGCGGAgGa-GACGc -3' miRNA: 3'- -UCCUGaGGCCGCCGCCUgUgaUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 118251 | 0.66 | 0.92742 |
Target: 5'- cGGACgcguggagcucgCCGGCGGCcucGACGuacUUGACGAc -3' miRNA: 3'- uCCUGa-----------GGCCGCCGc--CUGU---GAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 116310 | 0.69 | 0.804712 |
Target: 5'- gAGGugUCggcguCGGCGGCGG-CAgcGGCGAc -3' miRNA: 3'- -UCCugAG-----GCCGCCGCCuGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 115076 | 0.69 | 0.804712 |
Target: 5'- uGGAggCCGGCGGCGccgACUGAUGAu -3' miRNA: 3'- uCCUgaGGCCGCCGCcugUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 111937 | 0.66 | 0.912376 |
Target: 5'- uGGGCgccgCCGucGCGGUGGACGauuACGGg -3' miRNA: 3'- uCCUGa---GGC--CGCCGCCUGUgauUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 111701 | 0.68 | 0.860231 |
Target: 5'- uGGACgUCGGCGGUcc-CGCUGGCGAc -3' miRNA: 3'- uCCUGaGGCCGCCGccuGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 110166 | 0.66 | 0.926913 |
Target: 5'- uGGACUCCcGCaccucgucgauGGUGGGCucgacgaagauccuGCUGGCGAg -3' miRNA: 3'- uCCUGAGGcCG-----------CCGCCUG--------------UGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 109658 | 0.71 | 0.713956 |
Target: 5'- -cGACUCCGGCaGGguccucCGGGCGCUcuccGACGAc -3' miRNA: 3'- ucCUGAGGCCG-CC------GCCUGUGA----UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 109234 | 0.66 | 0.912376 |
Target: 5'- cGGGAga-CGGCGGCGGuagcggcguCGgUGACGAu -3' miRNA: 3'- -UCCUgagGCCGCCGCCu--------GUgAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 109121 | 0.68 | 0.837447 |
Target: 5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3' miRNA: 3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 105953 | 0.68 | 0.83666 |
Target: 5'- cGGGCUUCGcgcugaccgugguGCGGaCGGACACguuCGAg -3' miRNA: 3'- uCCUGAGGC-------------CGCC-GCCUGUGauuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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