Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 105381 | 0.67 | 0.900588 |
Target: 5'- cGGACUCgcugaCGGcCGGCGaggaGGCGCUGACc- -3' miRNA: 3'- uCCUGAG-----GCC-GCCGC----CUGUGAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 101812 | 0.7 | 0.760635 |
Target: 5'- -cGACUUCGGCGGUGGcgGgACUGGCa- -3' miRNA: 3'- ucCUGAGGCCGCCGCC--UgUGAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99942 | 0.69 | 0.778634 |
Target: 5'- cGGACcgCCgcGGCGGCGGcUGCUGcuGCGAa -3' miRNA: 3'- uCCUGa-GG--CCGCCGCCuGUGAU--UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99658 | 0.7 | 0.76969 |
Target: 5'- uGGAgaagCCGGCGGCGcGGCGCcGACa- -3' miRNA: 3'- uCCUga--GGCCGCCGC-CUGUGaUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99422 | 0.67 | 0.88795 |
Target: 5'- aGGGGC-CCGaGCGGCaGACGCcgccuCGAc -3' miRNA: 3'- -UCCUGaGGC-CGCCGcCUGUGauu--GCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99394 | 0.75 | 0.456685 |
Target: 5'- uGGGCUgcCUGGCGGCGGGCGCguuGCu- -3' miRNA: 3'- uCCUGA--GGCCGCCGCCUGUGau-UGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 97928 | 0.66 | 0.912376 |
Target: 5'- cAGGACccgcaguuccUCCGGCGGCaG-CGCgu-CGAa -3' miRNA: 3'- -UCCUG----------AGGCCGCCGcCuGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 94828 | 0.67 | 0.887951 |
Target: 5'- cGGGCcgUCGGCGGCGG-CGCccAACa- -3' miRNA: 3'- uCCUGa-GGCCGCCGCCuGUGa-UUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 94727 | 0.68 | 0.821394 |
Target: 5'- cGGGCcgaagUCGGCGGCGGAgACgcguuucagcGCGAa -3' miRNA: 3'- uCCUGa----GGCCGCCGCCUgUGau--------UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 90982 | 0.66 | 0.912376 |
Target: 5'- cGGAaaacCUCUGGCGGaCGGACuGC-AGCGu -3' miRNA: 3'- uCCU----GAGGCCGCC-GCCUG-UGaUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 83448 | 0.7 | 0.731937 |
Target: 5'- cGGGCUCCGGCacgaGCGGcaccuuacccgcgACGCcGACGAu -3' miRNA: 3'- uCCUGAGGCCGc---CGCC-------------UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 82132 | 0.71 | 0.66568 |
Target: 5'- -uGACguaUCCGGCGGCgcGGACGCUGuaccuccugGCGAg -3' miRNA: 3'- ucCUG---AGGCCGCCG--CCUGUGAU---------UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 81642 | 0.66 | 0.910663 |
Target: 5'- cAGGACaucagcagcaugucUCUGGUGucGCuGACGCUGACGGa -3' miRNA: 3'- -UCCUG--------------AGGCCGC--CGcCUGUGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 79968 | 0.67 | 0.887951 |
Target: 5'- cGGGA--CCGGCaGGUGGACGCcaaGACGu -3' miRNA: 3'- -UCCUgaGGCCG-CCGCCUGUGa--UUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 79616 | 0.7 | 0.751475 |
Target: 5'- cGGACccgCUGcGCGcGCGGACGCU-GCGGg -3' miRNA: 3'- uCCUGa--GGC-CGC-CGCCUGUGAuUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 79315 | 0.72 | 0.645163 |
Target: 5'- uGGGCcucccaCCGGCGGCGGuucgugcGCGCggagGACGAg -3' miRNA: 3'- uCCUGa-----GGCCGCCGCC-------UGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 78856 | 0.7 | 0.76969 |
Target: 5'- aAGGGCggCCGGCGcgccagcucGCGGuCGCcGACGAu -3' miRNA: 3'- -UCCUGa-GGCCGC---------CGCCuGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 75799 | 0.66 | 0.923297 |
Target: 5'- gGGGGag-CGGCGGCGaGGCAcCUGGCa- -3' miRNA: 3'- -UCCUgagGCCGCCGC-CUGU-GAUUGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 74848 | 0.66 | 0.906589 |
Target: 5'- aGGGGCgcagguugaGGCGGCGGugGuaGACGGg -3' miRNA: 3'- -UCCUGagg------CCGCCGCCugUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 74585 | 0.67 | 0.867456 |
Target: 5'- aGGGACaguuggugccgUCGGUGGCGGugGCggcCGAg -3' miRNA: 3'- -UCCUGa----------GGCCGCCGCCugUGauuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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