miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 101812 0.7 0.760635
Target:  5'- -cGACUUCGGCGGUGGcgGgACUGGCa- -3'
miRNA:   3'- ucCUGAGGCCGCCGCC--UgUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 68754 0.71 0.694782
Target:  5'- cGGACUCgGacaucGCGGCGG-UGCUGGCGGc -3'
miRNA:   3'- uCCUGAGgC-----CGCCGCCuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 200851 0.71 0.704397
Target:  5'- uGGAgUUCGGCGucgacgggggcGCGGGCGgUGGCGAa -3'
miRNA:   3'- uCCUgAGGCCGC-----------CGCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 109658 0.71 0.713956
Target:  5'- -cGACUCCGGCaGGguccucCGGGCGCUcuccGACGAc -3'
miRNA:   3'- ucCUGAGGCCG-CC------GCCUGUGA----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 161826 0.71 0.713956
Target:  5'- cGGACggaCgGGCgGGCGGACGggGACGGg -3'
miRNA:   3'- uCCUGa--GgCCG-CCGCCUGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 136487 0.7 0.732876
Target:  5'- cGGcGGCUCCGGCGGUcuGGACcCcAGCGu -3'
miRNA:   3'- -UC-CUGAGGCCGCCG--CCUGuGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 27272 0.7 0.74222
Target:  5'- gAGGACgaagagaCCGGCGGCGc-CGCcGACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcuGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 123014 0.7 0.74222
Target:  5'- cGGuCUCCGGCGaGCGuGACGuCcGACGGc -3'
miRNA:   3'- uCCuGAGGCCGC-CGC-CUGU-GaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 223073 0.7 0.748708
Target:  5'- gAGGACUCCGucgacgcagcuuccGaCGGCGGACGC---CGAg -3'
miRNA:   3'- -UCCUGAGGC--------------C-GCCGCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 48096 0.71 0.675416
Target:  5'- cGGACcuguggCGGCGGCGGugGCggcGGCGGu -3'
miRNA:   3'- uCCUGag----GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 145419 0.71 0.675416
Target:  5'- -aGACUCuCGGCGGCGG-CGCUuagggaaucGCGAu -3'
miRNA:   3'- ucCUGAG-GCCGCCGCCuGUGAu--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 82132 0.71 0.66568
Target:  5'- -uGACguaUCCGGCGGCgcGGACGCUGuaccuccugGCGAg -3'
miRNA:   3'- ucCUG---AGGCCGCCG--CCUGUGAU---------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 128377 0.76 0.397317
Target:  5'- cGGGGCUUCGGCGGCGaGAgccgGCUGugGGg -3'
miRNA:   3'- -UCCUGAGGCCGCCGC-CUg---UGAUugCU- -5'
15928 5' -57.7 NC_004065.1 + 131033 0.75 0.465552
Target:  5'- gGGGuGCUCUGGCGGCgccgGGAUACUAagaGCGGc -3'
miRNA:   3'- -UCC-UGAGGCCGCCG----CCUGUGAU---UGCU- -5'
15928 5' -57.7 NC_004065.1 + 38136 0.74 0.511149
Target:  5'- cGGACUUCGGCGuGCGcAUGCUGACGc -3'
miRNA:   3'- uCCUGAGGCCGC-CGCcUGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 19039 0.74 0.520496
Target:  5'- uGGACgaCGGCGGCGGugGCccacaucugUGACGAc -3'
miRNA:   3'- uCCUGagGCCGCCGCCugUG---------AUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 66628 0.73 0.557536
Target:  5'- cGGGCUgCGGCgcugcguGGCGGACgcGCUGACGc -3'
miRNA:   3'- uCCUGAgGCCG-------CCGCCUG--UGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 225376 0.73 0.587504
Target:  5'- uGGACgCCcGCGGCGGggGCGCUGGCGc -3'
miRNA:   3'- uCCUGaGGcCGCCGCC--UGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 163328 0.72 0.65592
Target:  5'- -uGACUCUGGUGGCGGACGgcAGCu- -3'
miRNA:   3'- ucCUGAGGCCGCCGCCUGUgaUUGcu -5'
15928 5' -57.7 NC_004065.1 + 36118 0.71 0.66568
Target:  5'- cGGGGCcgcugCCGGCGGCGG-UugUggUGGu -3'
miRNA:   3'- -UCCUGa----GGCCGCCGCCuGugAuuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.