Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 94727 | 0.68 | 0.821394 |
Target: 5'- cGGGCcgaagUCGGCGGCGGAgACgcguuucagcGCGAa -3' miRNA: 3'- uCCUGa----GGCCGCCGCCUgUGau--------UGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 205415 | 0.68 | 0.821394 |
Target: 5'- uGGcGCUUucgcaacaccggCGGCGGCGGugGCggcGACGAc -3' miRNA: 3'- uCC-UGAG------------GCCGCCGCCugUGa--UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 105953 | 0.68 | 0.83666 |
Target: 5'- cGGGCUUCGcgcugaccgugguGCGGaCGGACACguuCGAg -3' miRNA: 3'- uCCUGAGGC-------------CGCC-GCCUGUGauuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 211341 | 0.68 | 0.837447 |
Target: 5'- -cGACU-CGGUGGUGGGCgaauccgggaccGCUGGCGAa -3' miRNA: 3'- ucCUGAgGCCGCCGCCUG------------UGAUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 79616 | 0.7 | 0.751475 |
Target: 5'- cGGACccgCUGcGCGcGCGGACGCU-GCGGg -3' miRNA: 3'- uCCUGa--GGC-CGC-CGCCUGUGAuUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 28884 | 0.7 | 0.74222 |
Target: 5'- gAGGACUgCUGGCgccccgagucGGCGGACAa-GGCGGa -3' miRNA: 3'- -UCCUGA-GGCCG----------CCGCCUGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 28983 | 0.77 | 0.381288 |
Target: 5'- cGGAucaguCUCCGGCGGCGGugGCgagGCGc -3' miRNA: 3'- uCCU-----GAGGCCGCCGCCugUGau-UGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 139905 | 0.76 | 0.430643 |
Target: 5'- cGGGGcCUCCGGcCGGCGG-CGCcAGCGGg -3' miRNA: 3'- -UCCU-GAGGCC-GCCGCCuGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 119607 | 0.75 | 0.447909 |
Target: 5'- cAGGACgCCGGCGGCGGAgGa-GACGc -3' miRNA: 3'- -UCCUGaGGCCGCCGCCUgUgaUUGCu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 99394 | 0.75 | 0.456685 |
Target: 5'- uGGGCUgcCUGGCGGCGGGCGCguuGCu- -3' miRNA: 3'- uCCUGA--GGCCGCCGCCUGUGau-UGcu -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 141614 | 0.73 | 0.558497 |
Target: 5'- cGGGCUCCGcugcCGGCGGugGCggcucGGCGAc -3' miRNA: 3'- uCCUGAGGCc---GCCGCCugUGa----UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 136673 | 0.73 | 0.587504 |
Target: 5'- cGGGCgggucuggCCGGCGGCGGGCcgGCU--CGAg -3' miRNA: 3'- uCCUGa-------GGCCGCCGCCUG--UGAuuGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 168977 | 0.72 | 0.626563 |
Target: 5'- cGGugUCCGucagcGCGGCGGAC-CUcggaGGCGAc -3' miRNA: 3'- uCCugAGGC-----CGCCGCCUGuGA----UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 79315 | 0.72 | 0.645163 |
Target: 5'- uGGGCcucccaCCGGCGGCGGuucgugcGCGCggagGACGAg -3' miRNA: 3'- uCCUGa-----GGCCGCCGCC-------UGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 139873 | 0.71 | 0.685119 |
Target: 5'- cGGAg-CCGGCGGCaGGACG--GACGAg -3' miRNA: 3'- uCCUgaGGCCGCCG-CCUGUgaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 184803 | 0.71 | 0.704397 |
Target: 5'- gAGGACggugacgcaaCGGUGGCGGugGCggcAGCGGc -3' miRNA: 3'- -UCCUGag--------GCCGCCGCCugUGa--UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 11824 | 0.7 | 0.723452 |
Target: 5'- cGGACggagUCGGUGGCGGGguCgGACGGa -3' miRNA: 3'- uCCUGa---GGCCGCCGCCUguGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 30706 | 0.7 | 0.723452 |
Target: 5'- -cGACgUCgaGGUGGCGGACGCguugAACGAc -3' miRNA: 3'- ucCUG-AGg-CCGCCGCCUGUGa---UUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 83448 | 0.7 | 0.731937 |
Target: 5'- cGGGCUCCGGCacgaGCGGcaccuuacccgcgACGCcGACGAu -3' miRNA: 3'- uCCUGAGGCCGc---CGCC-------------UGUGaUUGCU- -5' |
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15928 | 5' | -57.7 | NC_004065.1 | + | 66645 | 0.7 | 0.732876 |
Target: 5'- -cGGCUUCGGCgcGGUGGGCGCccGGCGAg -3' miRNA: 3'- ucCUGAGGCCG--CCGCCUGUGa-UUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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