Results 101 - 116 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 120395 | 0.7 | 0.760635 |
Target: 5'- cAGGACgcccucgaCGGUGGUGGGCACc-GCGGc -3' miRNA: 3'- -UCCUGag------GCCGCCGCCUGUGauUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 211341 | 0.68 | 0.837447 |
Target: 5'- -cGACU-CGGUGGUGGGCgaauccgggaccGCUGGCGAa -3' miRNA: 3'- ucCUGAgGCCGCCGCCUG------------UGAUUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 105953 | 0.68 | 0.83666 |
Target: 5'- cGGGCUUCGcgcugaccgugguGCGGaCGGACACguuCGAg -3' miRNA: 3'- uCCUGAGGC-------------CGCC-GCCUGUGauuGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 205415 | 0.68 | 0.821394 |
Target: 5'- uGGcGCUUucgcaacaccggCGGCGGCGGugGCggcGACGAc -3' miRNA: 3'- uCC-UGAG------------GCCGCCGCCugUGa--UUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 94727 | 0.68 | 0.821394 |
Target: 5'- cGGGCcgaagUCGGCGGCGGAgACgcguuucagcGCGAa -3' miRNA: 3'- uCCUGa----GGCCGCCGCCUgUGau--------UGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 30764 | 0.69 | 0.813128 |
Target: 5'- cGGAaUCCgaGGuCGGCGGACGCgGACGc -3' miRNA: 3'- uCCUgAGG--CC-GCCGCCUGUGaUUGCu -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 192991 | 0.69 | 0.813128 |
Target: 5'- gAGGACgaCGGUcgacucucuGGCGGGCGgUAGCGGu -3' miRNA: 3'- -UCCUGagGCCG---------CCGCCUGUgAUUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 116310 | 0.69 | 0.804712 |
Target: 5'- gAGGugUCggcguCGGCGGCGG-CAgcGGCGAc -3' miRNA: 3'- -UCCugAG-----GCCGCCGCCuGUgaUUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 115076 | 0.69 | 0.804712 |
Target: 5'- uGGAggCCGGCGGCGccgACUGAUGAu -3' miRNA: 3'- uCCUgaGGCCGCCGCcugUGAUUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 32231 | 0.69 | 0.804712 |
Target: 5'- cGGGCgCUGGUGaccaacGCGGACACcGGCGAu -3' miRNA: 3'- uCCUGaGGCCGC------CGCCUGUGaUUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 68500 | 0.69 | 0.787457 |
Target: 5'- cAGG-CUCaggugaGGCGGCGGACGCa----- -3' miRNA: 3'- -UCCuGAGg-----CCGCCGCCUGUGauugcu -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 99942 | 0.69 | 0.778634 |
Target: 5'- cGGACcgCCgcGGCGGCGGcUGCUGcuGCGAa -3' miRNA: 3'- uCCUGa-GG--CCGCCGCCuGUGAU--UGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 66744 | 0.69 | 0.778634 |
Target: 5'- cGGACcCCGGCGGCGu-CGCgacCGAa -3' miRNA: 3'- uCCUGaGGCCGCCGCcuGUGauuGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 99658 | 0.7 | 0.76969 |
Target: 5'- uGGAgaagCCGGCGGCGcGGCGCcGACa- -3' miRNA: 3'- uCCUga--GGCCGCCGC-CUGUGaUUGcu -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 78856 | 0.7 | 0.76969 |
Target: 5'- aAGGGCggCCGGCGcgccagcucGCGGuCGCcGACGAu -3' miRNA: 3'- -UCCUGa-GGCCGC---------CGCCuGUGaUUGCU- -5' |
|||||||
15928 | 5' | -57.7 | NC_004065.1 | + | 4681 | 1.09 | 0.003675 |
Target: 5'- gAGGACUCCGGCGGCGGACACUAACGAu -3' miRNA: 3'- -UCCUGAGGCCGCCGCCUGUGAUUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home