miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 68500 0.69 0.787457
Target:  5'- cAGG-CUCaggugaGGCGGCGGACGCa----- -3'
miRNA:   3'- -UCCuGAGg-----CCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 99658 0.7 0.76969
Target:  5'- uGGAgaagCCGGCGGCGcGGCGCcGACa- -3'
miRNA:   3'- uCCUga--GGCCGCCGC-CUGUGaUUGcu -5'
15928 5' -57.7 NC_004065.1 + 184803 0.71 0.704397
Target:  5'- gAGGACggugacgcaaCGGUGGCGGugGCggcAGCGGc -3'
miRNA:   3'- -UCCUGag--------GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 119607 0.75 0.447909
Target:  5'- cAGGACgCCGGCGGCGGAgGa-GACGc -3'
miRNA:   3'- -UCCUGaGGCCGCCGCCUgUgaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 132017 0.67 0.867456
Target:  5'- --cACgcgCCGGCGGUGGugACccacGACGAa -3'
miRNA:   3'- uccUGa--GGCCGCCGCCugUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30764 0.69 0.813128
Target:  5'- cGGAaUCCgaGGuCGGCGGACGCgGACGc -3'
miRNA:   3'- uCCUgAGG--CC-GCCGCCUGUGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 120395 0.7 0.760635
Target:  5'- cAGGACgcccucgaCGGUGGUGGGCACc-GCGGc -3'
miRNA:   3'- -UCCUGag------GCCGCCGCCUGUGauUGCU- -5'
15928 5' -57.7 NC_004065.1 + 139905 0.76 0.430643
Target:  5'- cGGGGcCUCCGGcCGGCGG-CGCcAGCGGg -3'
miRNA:   3'- -UCCU-GAGGCC-GCCGCCuGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 192991 0.69 0.813128
Target:  5'- gAGGACgaCGGUcgacucucuGGCGGGCGgUAGCGGu -3'
miRNA:   3'- -UCCUGagGCCG---------CCGCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 28983 0.77 0.381288
Target:  5'- cGGAucaguCUCCGGCGGCGGugGCgagGCGc -3'
miRNA:   3'- uCCU-----GAGGCCGCCGCCugUGau-UGCu -5'
15928 5' -57.7 NC_004065.1 + 78856 0.7 0.76969
Target:  5'- aAGGGCggCCGGCGcgccagcucGCGGuCGCcGACGAu -3'
miRNA:   3'- -UCCUGa-GGCCGC---------CGCCuGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 32231 0.69 0.804712
Target:  5'- cGGGCgCUGGUGaccaacGCGGACACcGGCGAu -3'
miRNA:   3'- uCCUGaGGCCGC------CGCCUGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 66645 0.7 0.732876
Target:  5'- -cGGCUUCGGCgcGGUGGGCGCccGGCGAg -3'
miRNA:   3'- ucCUGAGGCCG--CCGCCUGUGa-UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 11824 0.7 0.723452
Target:  5'- cGGACggagUCGGUGGCGGGguCgGACGGa -3'
miRNA:   3'- uCCUGa---GGCCGCCGCCUguGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 168977 0.72 0.626563
Target:  5'- cGGugUCCGucagcGCGGCGGAC-CUcggaGGCGAc -3'
miRNA:   3'- uCCugAGGC-----CGCCGCCUGuGA----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 99394 0.75 0.456685
Target:  5'- uGGGCUgcCUGGCGGCGGGCGCguuGCu- -3'
miRNA:   3'- uCCUGA--GGCCGCCGCCUGUGau-UGcu -5'
15928 5' -57.7 NC_004065.1 + 79968 0.67 0.887951
Target:  5'- cGGGA--CCGGCaGGUGGACGCcaaGACGu -3'
miRNA:   3'- -UCCUgaGGCCG-CCGCCUGUGa--UUGCu -5'
15928 5' -57.7 NC_004065.1 + 189760 0.67 0.867456
Target:  5'- gAGGAUUgCGGUGGCggcaguGGACGCUGuuuggaauuCGAu -3'
miRNA:   3'- -UCCUGAgGCCGCCG------CCUGUGAUu--------GCU- -5'
15928 5' -57.7 NC_004065.1 + 211341 0.68 0.837447
Target:  5'- -cGACU-CGGUGGUGGGCgaauccgggaccGCUGGCGAa -3'
miRNA:   3'- ucCUGAgGCCGCCGCCUG------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 94727 0.68 0.821394
Target:  5'- cGGGCcgaagUCGGCGGCGGAgACgcguuucagcGCGAa -3'
miRNA:   3'- uCCUGa----GGCCGCCGCCUgUGau--------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.