miRNA display CGI


Results 41 - 60 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 105381 0.67 0.900588
Target:  5'- cGGACUCgcugaCGGcCGGCGaggaGGCGCUGACc- -3'
miRNA:   3'- uCCUGAG-----GCC-GCCGC----CUGUGAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 205415 0.68 0.821394
Target:  5'- uGGcGCUUucgcaacaccggCGGCGGCGGugGCggcGACGAc -3'
miRNA:   3'- uCC-UGAG------------GCCGCCGCCugUGa--UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 66645 0.7 0.732876
Target:  5'- -cGGCUUCGGCgcGGUGGGCGCccGGCGAg -3'
miRNA:   3'- ucCUGAGGCCG--CCGCCUGUGa-UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 143331 0.67 0.900588
Target:  5'- gGGGGCgggGGCGGCGGcagggcgagggaACACUGGgGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCC------------UGUGAUUgCU- -5'
15928 5' -57.7 NC_004065.1 + 83448 0.7 0.731937
Target:  5'- cGGGCUCCGGCacgaGCGGcaccuuacccgcgACGCcGACGAu -3'
miRNA:   3'- uCCUGAGGCCGc---CGCC-------------UGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 176331 0.66 0.917945
Target:  5'- gAGGGCggUCgGGCGGCG-ACACgaucaucgGAUGAc -3'
miRNA:   3'- -UCCUG--AGgCCGCCGCcUGUGa-------UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 79616 0.7 0.751475
Target:  5'- cGGACccgCUGcGCGcGCGGACGCU-GCGGg -3'
miRNA:   3'- uCCUGa--GGC-CGC-CGCCUGUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 155354 0.66 0.917945
Target:  5'- cGGACcCUGcGCuacGGCGGACGCgccGCGGu -3'
miRNA:   3'- uCCUGaGGC-CG---CCGCCUGUGau-UGCU- -5'
15928 5' -57.7 NC_004065.1 + 120458 0.66 0.917945
Target:  5'- cAGGAgaCaGGCGGCcaccucgaGGuCGCUGACGAc -3'
miRNA:   3'- -UCCUgaGgCCGCCG--------CCuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 18186 0.66 0.912376
Target:  5'- cGGGACUcCCGuGCGauagccuuguccGCGGACuACUAcACGGa -3'
miRNA:   3'- -UCCUGA-GGC-CGC------------CGCCUG-UGAU-UGCU- -5'
15928 5' -57.7 NC_004065.1 + 111937 0.66 0.912376
Target:  5'- uGGGCgccgCCGucGCGGUGGACGauuACGGg -3'
miRNA:   3'- uCCUGa---GGC--CGCCGCCUGUgauUGCU- -5'
15928 5' -57.7 NC_004065.1 + 147091 0.66 0.911807
Target:  5'- cAGcGAUUaCCGGCGGaGGACuccgauuucgaguACUGACGGc -3'
miRNA:   3'- -UC-CUGA-GGCCGCCgCCUG-------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30384 0.66 0.90659
Target:  5'- uGGACgugacCUGGCGgaucGCGGACAacgugGACGAg -3'
miRNA:   3'- uCCUGa----GGCCGC----CGCCUGUga---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 33647 0.67 0.894374
Target:  5'- cGGGGCgcgcuucgaccgUCCGGCGcGCGGGgagggcCGCU-GCGAg -3'
miRNA:   3'- -UCCUG------------AGGCCGC-CGCCU------GUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 79968 0.67 0.887951
Target:  5'- cGGGA--CCGGCaGGUGGACGCcaaGACGu -3'
miRNA:   3'- -UCCUgaGGCCG-CCGCCUGUGa--UUGCu -5'
15928 5' -57.7 NC_004065.1 + 132017 0.67 0.867456
Target:  5'- --cACgcgCCGGCGGUGGugACccacGACGAa -3'
miRNA:   3'- uccUGa--GGCCGCCGCCugUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 211341 0.68 0.837447
Target:  5'- -cGACU-CGGUGGUGGGCgaauccgggaccGCUGGCGAa -3'
miRNA:   3'- ucCUGAgGCCGCCGCCUG------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 192991 0.69 0.813128
Target:  5'- gAGGACgaCGGUcgacucucuGGCGGGCGgUAGCGGu -3'
miRNA:   3'- -UCCUGagGCCG---------CCGCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 32231 0.69 0.804712
Target:  5'- cGGGCgCUGGUGaccaacGCGGACACcGGCGAu -3'
miRNA:   3'- uCCUGaGGCCGC------CGCCUGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 99658 0.7 0.76969
Target:  5'- uGGAgaagCCGGCGGCGcGGCGCcGACa- -3'
miRNA:   3'- uCCUga--GGCCGCCGC-CUGUGaUUGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.