miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 143331 0.67 0.900588
Target:  5'- gGGGGCgggGGCGGCGGcagggcgagggaACACUGGgGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCC------------UGUGAUUgCU- -5'
15928 5' -57.7 NC_004065.1 + 33647 0.67 0.894374
Target:  5'- cGGGGCgcgcuucgaccgUCCGGCGcGCGGGgagggcCGCU-GCGAg -3'
miRNA:   3'- -UCCUG------------AGGCCGC-CGCCU------GUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 203117 0.67 0.887951
Target:  5'- cGGGgUCCGGCGuGCGGuCG--AGCGGc -3'
miRNA:   3'- uCCUgAGGCCGC-CGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 79968 0.67 0.887951
Target:  5'- cGGGA--CCGGCaGGUGGACGCcaaGACGu -3'
miRNA:   3'- -UCCUgaGGCCG-CCGCCUGUGa--UUGCu -5'
15928 5' -57.7 NC_004065.1 + 28735 0.67 0.887951
Target:  5'- gAGGAgaCCgcGGUGGCGGACGCcuuccuGCGc -3'
miRNA:   3'- -UCCUgaGG--CCGCCGCCUGUGau----UGCu -5'
15928 5' -57.7 NC_004065.1 + 28983 0.77 0.381288
Target:  5'- cGGAucaguCUCCGGCGGCGGugGCgagGCGc -3'
miRNA:   3'- uCCU-----GAGGCCGCCGCCugUGau-UGCu -5'
15928 5' -57.7 NC_004065.1 + 120736 0.67 0.88132
Target:  5'- gGGGAUcgUUCGGCGuGacccaGGACACUGcugccGCGAg -3'
miRNA:   3'- -UCCUG--AGGCCGC-Cg----CCUGUGAU-----UGCU- -5'
15928 5' -57.7 NC_004065.1 + 109658 0.71 0.713956
Target:  5'- -cGACUCCGGCaGGguccucCGGGCGCUcuccGACGAc -3'
miRNA:   3'- ucCUGAGGCCG-CC------GCCUGUGA----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 29964 0.68 0.829503
Target:  5'- gGGGACcggugCUGGCGGCGG-CGgcGGCGGc -3'
miRNA:   3'- -UCCUGa----GGCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 109121 0.68 0.837447
Target:  5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 152309 0.68 0.845221
Target:  5'- cGGcGGCggugCCGGCGG-GGACGaUGACGGc -3'
miRNA:   3'- -UC-CUGa---GGCCGCCgCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 194847 0.68 0.845221
Target:  5'- cAGGcCgaccaCGGCGGCGGACACg----- -3'
miRNA:   3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 225376 0.73 0.587504
Target:  5'- uGGACgCCcGCGGCGGggGCGCUGGCGc -3'
miRNA:   3'- uCCUGaGGcCGCCGCC--UGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 184856 0.68 0.860231
Target:  5'- aGGGAUcgagucgagCgGGCGGCGGgACGCcgggAACGAg -3'
miRNA:   3'- -UCCUGa--------GgCCGCCGCC-UGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 138548 0.67 0.867456
Target:  5'- cGGcACgagCGGCGGCGGAC--UGACGGc -3'
miRNA:   3'- uCC-UGag-GCCGCCGCCUGugAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 135944 0.66 0.926913
Target:  5'- gGGGAuggcCUCUGGCGaucuuuucucgacaGCGGAaaACUGACGGa -3'
miRNA:   3'- -UCCU----GAGGCCGC--------------CGCCUg-UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 68154 0.66 0.932862
Target:  5'- uGGACgcggugaUCgCGGCGGCGcGCGC-GACGGa -3'
miRNA:   3'- uCCUG-------AG-GCCGCCGCcUGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 188620 0.68 0.829503
Target:  5'- cGGGACcgugucgCCGGCGGCGaGCACguaccacaccACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcUGUGau--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 68754 0.71 0.694782
Target:  5'- cGGACUCgGacaucGCGGCGG-UGCUGGCGGc -3'
miRNA:   3'- uCCUGAGgC-----CGCCGCCuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 200851 0.71 0.704397
Target:  5'- uGGAgUUCGGCGucgacgggggcGCGGGCGgUGGCGAa -3'
miRNA:   3'- uCCUgAGGCCGC-----------CGCCUGUgAUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.