miRNA display CGI


Results 81 - 100 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 134024 0.7 0.760635
Target:  5'- uGGGAagugcgaUGGCGGCGGAgGCU-GCGAu -3'
miRNA:   3'- -UCCUgag----GCCGCCGCCUgUGAuUGCU- -5'
15928 5' -57.7 NC_004065.1 + 74848 0.66 0.906589
Target:  5'- aGGGGCgcagguugaGGCGGCGGugGuaGACGGg -3'
miRNA:   3'- -UCCUGagg------CCGCCGCCugUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 97928 0.66 0.912376
Target:  5'- cAGGACccgcaguuccUCCGGCGGCaG-CGCgu-CGAa -3'
miRNA:   3'- -UCCUG----------AGGCCGCCGcCuGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 109234 0.66 0.912376
Target:  5'- cGGGAga-CGGCGGCGGuagcggcguCGgUGACGAu -3'
miRNA:   3'- -UCCUgagGCCGCCGCCu--------GUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 35614 0.66 0.912376
Target:  5'- cGGGAUcCaCGGCGGCGG-CGgcGGCGGg -3'
miRNA:   3'- -UCCUGaG-GCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 131247 0.66 0.917945
Target:  5'- cGGucguCUCCguGGCGGCGGACGuuCUGcGCGc -3'
miRNA:   3'- uCCu---GAGG--CCGCCGCCUGU--GAU-UGCu -5'
15928 5' -57.7 NC_004065.1 + 59706 0.66 0.917945
Target:  5'- aAGGGCgCCGaGCGGCcGcGGCGCacGGCGAc -3'
miRNA:   3'- -UCCUGaGGC-CGCCG-C-CUGUGa-UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 75799 0.66 0.923297
Target:  5'- gGGGGag-CGGCGGCGaGGCAcCUGGCa- -3'
miRNA:   3'- -UCCUgagGCCGCCGC-CUGU-GAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 135944 0.66 0.926913
Target:  5'- gGGGAuggcCUCUGGCGaucuuuucucgacaGCGGAaaACUGACGGa -3'
miRNA:   3'- -UCCU----GAGGCCGC--------------CGCCUg-UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 70467 0.67 0.900588
Target:  5'- gAGGACaccuUCaCGGCGGCguucagGGACACcgugaaGGCGAu -3'
miRNA:   3'- -UCCUG----AG-GCCGCCG------CCUGUGa-----UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 45107 0.67 0.894374
Target:  5'- gGGGucCUCCaGCGGCGG-CGaaGGCGAc -3'
miRNA:   3'- -UCCu-GAGGcCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 17290 0.67 0.900588
Target:  5'- uGGugUCgGGUgcGGCGGAgAC-AACGGc -3'
miRNA:   3'- uCCugAGgCCG--CCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 54503 0.7 0.76969
Target:  5'- gAGGACga-GGUGGUGGAgGCgguUGACGAg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUG---AUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 194573 0.69 0.813128
Target:  5'- cGGGCUCCGaccagcacGaCGGUGGACACcu-CGAa -3'
miRNA:   3'- uCCUGAGGC--------C-GCCGCCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 29964 0.68 0.829503
Target:  5'- gGGGACcggugCUGGCGGCGG-CGgcGGCGGc -3'
miRNA:   3'- -UCCUGa----GGCCGCCGCCuGUgaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 188620 0.68 0.829503
Target:  5'- cGGGACcgugucgCCGGCGGCGaGCACguaccacaccACGAc -3'
miRNA:   3'- -UCCUGa------GGCCGCCGCcUGUGau--------UGCU- -5'
15928 5' -57.7 NC_004065.1 + 109121 0.68 0.837447
Target:  5'- gGGGACggaGGUGGCGGGgAC-GGCGGg -3'
miRNA:   3'- -UCCUGaggCCGCCGCCUgUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 152309 0.68 0.845221
Target:  5'- cGGcGGCggugCCGGCGG-GGACGaUGACGGc -3'
miRNA:   3'- -UC-CUGa---GGCCGCCgCCUGUgAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 194847 0.68 0.845221
Target:  5'- cAGGcCgaccaCGGCGGCGGACACg----- -3'
miRNA:   3'- -UCCuGag---GCCGCCGCCUGUGauugcu -5'
15928 5' -57.7 NC_004065.1 + 184856 0.68 0.860231
Target:  5'- aGGGAUcgagucgagCgGGCGGCGGgACGCcgggAACGAg -3'
miRNA:   3'- -UCCUGa--------GgCCGCCGCC-UGUGa---UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.