miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1593 3' -55.4 NC_001347.2 + 140690 0.66 0.970024
Target:  5'- cGGCGGUcGCAUGUugggcgcuaGCGUGGcCGUAc-- -3'
miRNA:   3'- uCUGCCA-CGUGCA---------CGCGCC-GCAUuug -5'
1593 3' -55.4 NC_001347.2 + 88251 0.66 0.970024
Target:  5'- cGcCGGUGaagaGaGCGCGGCGUAcGCu -3'
miRNA:   3'- uCuGCCACgug-CaCGCGCCGCAUuUG- -5'
1593 3' -55.4 NC_001347.2 + 87653 0.66 0.969156
Target:  5'- -aGCGGcGCGCGUGCGgaucaGGCccgacauccagaccGUGAGCa -3'
miRNA:   3'- ucUGCCaCGUGCACGCg----CCG--------------CAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 17020 0.66 0.963897
Target:  5'- uGGCaGGcGCGCGUGgucCGCGGCGacuucgcgGAACg -3'
miRNA:   3'- uCUG-CCaCGUGCAC---GCGCCGCa-------UUUG- -5'
1593 3' -55.4 NC_001347.2 + 153360 0.66 0.963897
Target:  5'- aAGGCcGaGCGuCGUucGCGCGGCGUGcGCa -3'
miRNA:   3'- -UCUGcCaCGU-GCA--CGCGCCGCAUuUG- -5'
1593 3' -55.4 NC_001347.2 + 87604 0.66 0.962574
Target:  5'- -cGCGGUGCACGcccgugcccaccaGCGaCGGCGgcuGCu -3'
miRNA:   3'- ucUGCCACGUGCa------------CGC-GCCGCauuUG- -5'
1593 3' -55.4 NC_001347.2 + 163511 0.66 0.960527
Target:  5'- gAGGCGGcuuaGCGCGaguUGCGCGuucUGUAGGCg -3'
miRNA:   3'- -UCUGCCa---CGUGC---ACGCGCc--GCAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 65165 0.66 0.956945
Target:  5'- uGACGGUgauGCGCGgcuacagcgaGUGCGGCGauGGCu -3'
miRNA:   3'- uCUGCCA---CGUGCa---------CGCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 155964 0.66 0.956945
Target:  5'- aGGAucUGGUGCAgGccaCGCGGCGUAu-- -3'
miRNA:   3'- -UCU--GCCACGUgCac-GCGCCGCAUuug -5'
1593 3' -55.4 NC_001347.2 + 138528 0.66 0.956945
Target:  5'- gGGACGGUGUuuucACGUGCcCuGUGUGGGg -3'
miRNA:   3'- -UCUGCCACG----UGCACGcGcCGCAUUUg -5'
1593 3' -55.4 NC_001347.2 + 99144 0.66 0.956945
Target:  5'- -cGCGGcGCGCGUacgccgagacccGaCGCGGCGaUGGACg -3'
miRNA:   3'- ucUGCCaCGUGCA------------C-GCGCCGC-AUUUG- -5'
1593 3' -55.4 NC_001347.2 + 171605 0.66 0.953147
Target:  5'- uGACGGUGaACGUGgcuCGCuGCGUGuuuGCg -3'
miRNA:   3'- uCUGCCACgUGCAC---GCGcCGCAUu--UG- -5'
1593 3' -55.4 NC_001347.2 + 135073 0.66 0.953147
Target:  5'- gGGACGGUGauUGUGgaGgGGCGUAcuGACg -3'
miRNA:   3'- -UCUGCCACguGCACg-CgCCGCAU--UUG- -5'
1593 3' -55.4 NC_001347.2 + 66788 0.66 0.953147
Target:  5'- cGACGGUG---GUG-GCGGCGgcGGCa -3'
miRNA:   3'- uCUGCCACgugCACgCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 76619 0.67 0.94913
Target:  5'- cAGGCGGcgGCuGCG-GcCGCGGCGgaGGCc -3'
miRNA:   3'- -UCUGCCa-CG-UGCaC-GCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 170165 0.67 0.94913
Target:  5'- -cGCGGUGgaCGCGUGaguaGCGGUcUGAGCa -3'
miRNA:   3'- ucUGCCAC--GUGCACg---CGCCGcAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 87242 0.67 0.947882
Target:  5'- cAGACGGUGCgagcaguuggggauGCG-GCGCGcCGUAc-- -3'
miRNA:   3'- -UCUGCCACG--------------UGCaCGCGCcGCAUuug -5'
1593 3' -55.4 NC_001347.2 + 100517 0.67 0.940427
Target:  5'- cGuCGGUGCACGUagaGCaGCGGCccgcGACa -3'
miRNA:   3'- uCuGCCACGUGCA---CG-CGCCGcau-UUG- -5'
1593 3' -55.4 NC_001347.2 + 229511 0.67 0.935736
Target:  5'- cGGCGGUGUuuuggguguguCGggGCGCGGCGg---- -3'
miRNA:   3'- uCUGCCACGu----------GCa-CGCGCCGCauuug -5'
1593 3' -55.4 NC_001347.2 + 96184 0.67 0.935736
Target:  5'- aAGGCcucGG-GCACGgGCGUGGCGgccgUAGGCg -3'
miRNA:   3'- -UCUG---CCaCGUGCaCGCGCCGC----AUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.