Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1593 | 3' | -55.4 | NC_001347.2 | + | 140690 | 0.66 | 0.970024 |
Target: 5'- cGGCGGUcGCAUGUugggcgcuaGCGUGGcCGUAc-- -3' miRNA: 3'- uCUGCCA-CGUGCA---------CGCGCC-GCAUuug -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 66788 | 0.66 | 0.953147 |
Target: 5'- cGACGGUG---GUG-GCGGCGgcGGCa -3' miRNA: 3'- uCUGCCACgugCACgCGCCGCauUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 135073 | 0.66 | 0.953147 |
Target: 5'- gGGACGGUGauUGUGgaGgGGCGUAcuGACg -3' miRNA: 3'- -UCUGCCACguGCACg-CgCCGCAU--UUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 65165 | 0.66 | 0.956945 |
Target: 5'- uGACGGUgauGCGCGgcuacagcgaGUGCGGCGauGGCu -3' miRNA: 3'- uCUGCCA---CGUGCa---------CGCGCCGCauUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 155964 | 0.66 | 0.956945 |
Target: 5'- aGGAucUGGUGCAgGccaCGCGGCGUAu-- -3' miRNA: 3'- -UCU--GCCACGUgCac-GCGCCGCAUuug -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 171605 | 0.66 | 0.953147 |
Target: 5'- uGACGGUGaACGUGgcuCGCuGCGUGuuuGCg -3' miRNA: 3'- uCUGCCACgUGCAC---GCGcCGCAUu--UG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 138528 | 0.66 | 0.956945 |
Target: 5'- gGGACGGUGUuuucACGUGCcCuGUGUGGGg -3' miRNA: 3'- -UCUGCCACG----UGCACGcGcCGCAUUUg -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 163511 | 0.66 | 0.960527 |
Target: 5'- gAGGCGGcuuaGCGCGaguUGCGCGuucUGUAGGCg -3' miRNA: 3'- -UCUGCCa---CGUGC---ACGCGCc--GCAUUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 99144 | 0.66 | 0.956945 |
Target: 5'- -cGCGGcGCGCGUacgccgagacccGaCGCGGCGaUGGACg -3' miRNA: 3'- ucUGCCaCGUGCA------------C-GCGCCGC-AUUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 87604 | 0.66 | 0.962574 |
Target: 5'- -cGCGGUGCACGcccgugcccaccaGCGaCGGCGgcuGCu -3' miRNA: 3'- ucUGCCACGUGCa------------CGC-GCCGCauuUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 153360 | 0.66 | 0.963897 |
Target: 5'- aAGGCcGaGCGuCGUucGCGCGGCGUGcGCa -3' miRNA: 3'- -UCUGcCaCGU-GCA--CGCGCCGCAUuUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 17020 | 0.66 | 0.963897 |
Target: 5'- uGGCaGGcGCGCGUGgucCGCGGCGacuucgcgGAACg -3' miRNA: 3'- uCUG-CCaCGUGCAC---GCGCCGCa-------UUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 87653 | 0.66 | 0.969156 |
Target: 5'- -aGCGGcGCGCGUGCGgaucaGGCccgacauccagaccGUGAGCa -3' miRNA: 3'- ucUGCCaCGUGCACGCg----CCG--------------CAUUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 88251 | 0.66 | 0.970024 |
Target: 5'- cGcCGGUGaagaGaGCGCGGCGUAcGCu -3' miRNA: 3'- uCuGCCACgug-CaCGCGCCGCAUuUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 229511 | 0.67 | 0.935736 |
Target: 5'- cGGCGGUGUuuuggguguguCGggGCGCGGCGg---- -3' miRNA: 3'- uCUGCCACGu----------GCa-CGCGCCGCauuug -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 142559 | 0.67 | 0.935736 |
Target: 5'- aAGACGaG-GCugGcgGCGuCGGCGgGAGCa -3' miRNA: 3'- -UCUGC-CaCGugCa-CGC-GCCGCaUUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 170165 | 0.67 | 0.94913 |
Target: 5'- -cGCGGUGgaCGCGUGaguaGCGGUcUGAGCa -3' miRNA: 3'- ucUGCCAC--GUGCACg---CGCCGcAUUUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 87242 | 0.67 | 0.947882 |
Target: 5'- cAGACGGUGCgagcaguuggggauGCG-GCGCGcCGUAc-- -3' miRNA: 3'- -UCUGCCACG--------------UGCaCGCGCcGCAUuug -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 100517 | 0.67 | 0.940427 |
Target: 5'- cGuCGGUGCACGUagaGCaGCGGCccgcGACa -3' miRNA: 3'- uCuGCCACGUGCA---CG-CGCCGcau-UUG- -5' |
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1593 | 3' | -55.4 | NC_001347.2 | + | 96184 | 0.67 | 0.935736 |
Target: 5'- aAGGCcucGG-GCACGgGCGUGGCGgccgUAGGCg -3' miRNA: 3'- -UCUG---CCaCGUGCaCGCGCCGC----AUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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