miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1593 3' -55.4 NC_001347.2 + 176634 1.01 0.01539
Target:  5'- cAGACGGUGCACG-GCGCGGCGUAAACg -3'
miRNA:   3'- -UCUGCCACGUGCaCGCGCCGCAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 2304 0.76 0.504897
Target:  5'- uGGACGG-GCACGUGUacccgcugGCGGCG-GAGCu -3'
miRNA:   3'- -UCUGCCaCGUGCACG--------CGCCGCaUUUG- -5'
1593 3' -55.4 NC_001347.2 + 139471 0.73 0.662787
Target:  5'- gAGGCGGUGCGCGUGC-CGuuGUAc-- -3'
miRNA:   3'- -UCUGCCACGUGCACGcGCcgCAUuug -5'
1593 3' -55.4 NC_001347.2 + 13945 0.72 0.721981
Target:  5'- gGGGCGG-GCGCG-GgGUGGCG-AAGCg -3'
miRNA:   3'- -UCUGCCaCGUGCaCgCGCCGCaUUUG- -5'
1593 3' -55.4 NC_001347.2 + 139325 0.72 0.731638
Target:  5'- uGGCGGcGU-UGUGCGCGGCgGUGGGCu -3'
miRNA:   3'- uCUGCCaCGuGCACGCGCCG-CAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 140579 0.72 0.760077
Target:  5'- cGGCGGUGCugGcggGgGUGGUGgacgAGACg -3'
miRNA:   3'- uCUGCCACGugCa--CgCGCCGCa---UUUG- -5'
1593 3' -55.4 NC_001347.2 + 98248 0.72 0.760077
Target:  5'- uGGugGaucacuucGCGCGUGUGCGGCGUAc-- -3'
miRNA:   3'- -UCugCca------CGUGCACGCGCCGCAUuug -5'
1593 3' -55.4 NC_001347.2 + 148613 0.71 0.80519
Target:  5'- cGGCGGUGCggucGCGggugGC-CGGCGUcAGCg -3'
miRNA:   3'- uCUGCCACG----UGCa---CGcGCCGCAuUUG- -5'
1593 3' -55.4 NC_001347.2 + 184369 0.71 0.80519
Target:  5'- gAGGCGGcaCGCGUGUGCGGgGacGACg -3'
miRNA:   3'- -UCUGCCacGUGCACGCGCCgCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 34301 0.7 0.813795
Target:  5'- aAGuACGGUGUcgccaccguugACGUGgGCGGCGaugaGAACg -3'
miRNA:   3'- -UC-UGCCACG-----------UGCACgCGCCGCa---UUUG- -5'
1593 3' -55.4 NC_001347.2 + 31604 0.7 0.822241
Target:  5'- aGGACGGcgUGUugGacgcUGUGUGGCGUGuACa -3'
miRNA:   3'- -UCUGCC--ACGugC----ACGCGCCGCAUuUG- -5'
1593 3' -55.4 NC_001347.2 + 107082 0.7 0.845772
Target:  5'- uGACGGUGCGCGUacgacacGCGCuGUGcuGGCa -3'
miRNA:   3'- uCUGCCACGUGCA-------CGCGcCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 184688 0.7 0.846557
Target:  5'- cGGAUGGaGCGCGcccacaUGUGCGGCGUcugguGCa -3'
miRNA:   3'- -UCUGCCaCGUGC------ACGCGCCGCAuu---UG- -5'
1593 3' -55.4 NC_001347.2 + 1939 0.7 0.846557
Target:  5'- -cGCGGUgGCugGgcUGCGCGGCGgggccGGCg -3'
miRNA:   3'- ucUGCCA-CGugC--ACGCGCCGCau---UUG- -5'
1593 3' -55.4 NC_001347.2 + 159567 0.7 0.846557
Target:  5'- cGGCGGUGUugGa--GCGGCGccAGACg -3'
miRNA:   3'- uCUGCCACGugCacgCGCCGCa-UUUG- -5'
1593 3' -55.4 NC_001347.2 + 198095 0.69 0.859601
Target:  5'- cGACGGUGacggucccgcucguCGCGUugaggauagucGCGCGGUGgcAGCg -3'
miRNA:   3'- uCUGCCAC--------------GUGCA-----------CGCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 229705 0.69 0.861845
Target:  5'- cGGCGGUGUGCGcggccucggggUGUGCGGCuucgcagGAACg -3'
miRNA:   3'- uCUGCCACGUGC-----------ACGCGCCGca-----UUUG- -5'
1593 3' -55.4 NC_001347.2 + 139363 0.69 0.861845
Target:  5'- gAGACGacuGUGCACGUG-GUGGUGggcAACg -3'
miRNA:   3'- -UCUGC---CACGUGCACgCGCCGCau-UUG- -5'
1593 3' -55.4 NC_001347.2 + 226 0.69 0.861845
Target:  5'- cGGCGGUGUGCGcggccucggggUGUGCGGCuucgcagGAACg -3'
miRNA:   3'- uCUGCCACGUGC-----------ACGCGCCGca-----UUUG- -5'
1593 3' -55.4 NC_001347.2 + 16184 0.69 0.869195
Target:  5'- gAGACGGaGCugGUGCucugcauggGUGGCGgu-ACg -3'
miRNA:   3'- -UCUGCCaCGugCACG---------CGCCGCauuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.