miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1593 3' -55.4 NC_001347.2 + 192647 0.67 0.935736
Target:  5'- gAGACGcUGCGuCGguuucUGCGCGGCGacAGCu -3'
miRNA:   3'- -UCUGCcACGU-GC-----ACGCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 96184 0.67 0.935736
Target:  5'- aAGGCcucGG-GCACGgGCGUGGCGgccgUAGGCg -3'
miRNA:   3'- -UCUG---CCaCGUGCaCGCGCCGC----AUUUG- -5'
1593 3' -55.4 NC_001347.2 + 229511 0.67 0.935736
Target:  5'- cGGCGGUGUuuuggguguguCGggGCGCGGCGg---- -3'
miRNA:   3'- uCUGCCACGu----------GCa-CGCGCCGCauuug -5'
1593 3' -55.4 NC_001347.2 + 142559 0.67 0.935736
Target:  5'- aAGACGaG-GCugGcgGCGuCGGCGgGAGCa -3'
miRNA:   3'- -UCUGC-CaCGugCa-CGC-GCCGCaUUUG- -5'
1593 3' -55.4 NC_001347.2 + 215831 0.67 0.935254
Target:  5'- gGGACGGUGUACGgGUGCucacgcuGGagGUGAAUg -3'
miRNA:   3'- -UCUGCCACGUGCaCGCG-------CCg-CAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 190509 0.68 0.925667
Target:  5'- cGAUGGaaCGCGUGCGCGuccacaGCGUGAc- -3'
miRNA:   3'- uCUGCCacGUGCACGCGC------CGCAUUug -5'
1593 3' -55.4 NC_001347.2 + 47968 0.68 0.920289
Target:  5'- aAGACcGUGCggggaggauugACGUGUGCGGUGcuugugGAACa -3'
miRNA:   3'- -UCUGcCACG-----------UGCACGCGCCGCa-----UUUG- -5'
1593 3' -55.4 NC_001347.2 + 137464 0.68 0.914683
Target:  5'- -cGCGcGcGUGCGUGCGCGcGCGUGAc- -3'
miRNA:   3'- ucUGC-CaCGUGCACGCGC-CGCAUUug -5'
1593 3' -55.4 NC_001347.2 + 184221 0.68 0.914683
Target:  5'- aGGGCGGUcGCuaGCGUGuCGCaGCGUucGCc -3'
miRNA:   3'- -UCUGCCA-CG--UGCAC-GCGcCGCAuuUG- -5'
1593 3' -55.4 NC_001347.2 + 88617 0.68 0.914683
Target:  5'- cGGCGGccUGCGCGgccugcacCGCGGCuUGAGCg -3'
miRNA:   3'- uCUGCC--ACGUGCac------GCGCCGcAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 75407 0.68 0.908848
Target:  5'- gGGAgCGGcgGC-CGUG-GCGGCGgcAGCg -3'
miRNA:   3'- -UCU-GCCa-CGuGCACgCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 2032 0.68 0.902788
Target:  5'- cGGCGGggacGCGcCGUGCGCGauaGCGgGAGCc -3'
miRNA:   3'- uCUGCCa---CGU-GCACGCGC---CGCaUUUG- -5'
1593 3' -55.4 NC_001347.2 + 109538 0.68 0.902788
Target:  5'- cGACGGcgUGCACGU-CG-GGCGUuauGACa -3'
miRNA:   3'- uCUGCC--ACGUGCAcGCgCCGCAu--UUG- -5'
1593 3' -55.4 NC_001347.2 + 173669 0.69 0.889999
Target:  5'- cGGCGGUggcggcaagaaGCACGacCGCGGUGgcGGCg -3'
miRNA:   3'- uCUGCCA-----------CGUGCacGCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 167684 0.69 0.889999
Target:  5'- uAGcCGuUGCACGcGuCGCGGCGUAuGCa -3'
miRNA:   3'- -UCuGCcACGUGCaC-GCGCCGCAUuUG- -5'
1593 3' -55.4 NC_001347.2 + 157214 0.69 0.883276
Target:  5'- -cGCGGUGCGC-UGCagccggaggaaGCGGCGguagAAACg -3'
miRNA:   3'- ucUGCCACGUGcACG-----------CGCCGCa---UUUG- -5'
1593 3' -55.4 NC_001347.2 + 16184 0.69 0.869195
Target:  5'- gAGACGGaGCugGUGCucugcauggGUGGCGgu-ACg -3'
miRNA:   3'- -UCUGCCaCGugCACG---------CGCCGCauuUG- -5'
1593 3' -55.4 NC_001347.2 + 229705 0.69 0.861845
Target:  5'- cGGCGGUGUGCGcggccucggggUGUGCGGCuucgcagGAACg -3'
miRNA:   3'- uCUGCCACGUGC-----------ACGCGCCGca-----UUUG- -5'
1593 3' -55.4 NC_001347.2 + 139363 0.69 0.861845
Target:  5'- gAGACGacuGUGCACGUG-GUGGUGggcAACg -3'
miRNA:   3'- -UCUGC---CACGUGCACgCGCCGCau-UUG- -5'
1593 3' -55.4 NC_001347.2 + 226 0.69 0.861845
Target:  5'- cGGCGGUGUGCGcggccucggggUGUGCGGCuucgcagGAACg -3'
miRNA:   3'- uCUGCCACGUGC-----------ACGCGCCGca-----UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.