miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1593 3' -55.4 NC_001347.2 + 226 0.69 0.861845
Target:  5'- cGGCGGUGUGCGcggccucggggUGUGCGGCuucgcagGAACg -3'
miRNA:   3'- uCUGCCACGUGC-----------ACGCGCCGca-----UUUG- -5'
1593 3' -55.4 NC_001347.2 + 1939 0.7 0.846557
Target:  5'- -cGCGGUgGCugGgcUGCGCGGCGgggccGGCg -3'
miRNA:   3'- ucUGCCA-CGugC--ACGCGCCGCau---UUG- -5'
1593 3' -55.4 NC_001347.2 + 2032 0.68 0.902788
Target:  5'- cGGCGGggacGCGcCGUGCGCGauaGCGgGAGCc -3'
miRNA:   3'- uCUGCCa---CGU-GCACGCGC---CGCaUUUG- -5'
1593 3' -55.4 NC_001347.2 + 2304 0.76 0.504897
Target:  5'- uGGACGG-GCACGUGUacccgcugGCGGCG-GAGCu -3'
miRNA:   3'- -UCUGCCaCGUGCACG--------CGCCGCaUUUG- -5'
1593 3' -55.4 NC_001347.2 + 13945 0.72 0.721981
Target:  5'- gGGGCGG-GCGCG-GgGUGGCG-AAGCg -3'
miRNA:   3'- -UCUGCCaCGUGCaCgCGCCGCaUUUG- -5'
1593 3' -55.4 NC_001347.2 + 16184 0.69 0.869195
Target:  5'- gAGACGGaGCugGUGCucugcauggGUGGCGgu-ACg -3'
miRNA:   3'- -UCUGCCaCGugCACG---------CGCCGCauuUG- -5'
1593 3' -55.4 NC_001347.2 + 17020 0.66 0.963897
Target:  5'- uGGCaGGcGCGCGUGgucCGCGGCGacuucgcgGAACg -3'
miRNA:   3'- uCUG-CCaCGUGCAC---GCGCCGCa-------UUUG- -5'
1593 3' -55.4 NC_001347.2 + 31604 0.7 0.822241
Target:  5'- aGGACGGcgUGUugGacgcUGUGUGGCGUGuACa -3'
miRNA:   3'- -UCUGCC--ACGugC----ACGCGCCGCAUuUG- -5'
1593 3' -55.4 NC_001347.2 + 34301 0.7 0.813795
Target:  5'- aAGuACGGUGUcgccaccguugACGUGgGCGGCGaugaGAACg -3'
miRNA:   3'- -UC-UGCCACG-----------UGCACgCGCCGCa---UUUG- -5'
1593 3' -55.4 NC_001347.2 + 47968 0.68 0.920289
Target:  5'- aAGACcGUGCggggaggauugACGUGUGCGGUGcuugugGAACa -3'
miRNA:   3'- -UCUGcCACG-----------UGCACGCGCCGCa-----UUUG- -5'
1593 3' -55.4 NC_001347.2 + 65165 0.66 0.956945
Target:  5'- uGACGGUgauGCGCGgcuacagcgaGUGCGGCGauGGCu -3'
miRNA:   3'- uCUGCCA---CGUGCa---------CGCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 66788 0.66 0.953147
Target:  5'- cGACGGUG---GUG-GCGGCGgcGGCa -3'
miRNA:   3'- uCUGCCACgugCACgCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 75407 0.68 0.908848
Target:  5'- gGGAgCGGcgGC-CGUG-GCGGCGgcAGCg -3'
miRNA:   3'- -UCU-GCCa-CGuGCACgCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 76619 0.67 0.94913
Target:  5'- cAGGCGGcgGCuGCG-GcCGCGGCGgaGGCc -3'
miRNA:   3'- -UCUGCCa-CG-UGCaC-GCGCCGCauUUG- -5'
1593 3' -55.4 NC_001347.2 + 82722 0.67 0.935736
Target:  5'- uGGCGGUG---GUGCaGCGGCGgcUGAGCg -3'
miRNA:   3'- uCUGCCACgugCACG-CGCCGC--AUUUG- -5'
1593 3' -55.4 NC_001347.2 + 87242 0.67 0.947882
Target:  5'- cAGACGGUGCgagcaguuggggauGCG-GCGCGcCGUAc-- -3'
miRNA:   3'- -UCUGCCACG--------------UGCaCGCGCcGCAUuug -5'
1593 3' -55.4 NC_001347.2 + 87604 0.66 0.962574
Target:  5'- -cGCGGUGCACGcccgugcccaccaGCGaCGGCGgcuGCu -3'
miRNA:   3'- ucUGCCACGUGCa------------CGC-GCCGCauuUG- -5'
1593 3' -55.4 NC_001347.2 + 87653 0.66 0.969156
Target:  5'- -aGCGGcGCGCGUGCGgaucaGGCccgacauccagaccGUGAGCa -3'
miRNA:   3'- ucUGCCaCGUGCACGCg----CCG--------------CAUUUG- -5'
1593 3' -55.4 NC_001347.2 + 88251 0.66 0.970024
Target:  5'- cGcCGGUGaagaGaGCGCGGCGUAcGCu -3'
miRNA:   3'- uCuGCCACgug-CaCGCGCCGCAUuUG- -5'
1593 3' -55.4 NC_001347.2 + 88617 0.68 0.914683
Target:  5'- cGGCGGccUGCGCGgccugcacCGCGGCuUGAGCg -3'
miRNA:   3'- uCUGCC--ACGUGCac------GCGCCGcAUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.