Results 1 - 20 of 156 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 199207 | 0.66 | 0.983801 |
Target: 5'- gUCGcgagGACGCGcaccGCGaCGGUGACGaCAGg -3' miRNA: 3'- -AGCa---UUGCGC----UGCgGCCACUGC-GUUg -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 105128 | 0.66 | 0.983801 |
Target: 5'- cCGcugGACGCGGCGCacaucgaGGa-GCGCAACc -3' miRNA: 3'- aGCa--UUGCGCUGCGg------CCacUGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 110697 | 0.66 | 0.983801 |
Target: 5'- gUGUGACGUGA-GCCGccGcCGCGACu -3' miRNA: 3'- aGCAUUGCGCUgCGGCcaCuGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 35127 | 0.66 | 0.983801 |
Target: 5'- aCGUAGCaaCGAucucCGCCGGUGuacacCGCGAUc -3' miRNA: 3'- aGCAUUGc-GCU----GCGGCCACu----GCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 13810 | 0.66 | 0.981912 |
Target: 5'- -aGUAGCGCcGCGCCuuuacGUcACGCGGCa -3' miRNA: 3'- agCAUUGCGcUGCGGc----CAcUGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 102268 | 0.66 | 0.981912 |
Target: 5'- gCGUuacaGGCGCagaaGACGUCGGUcaGGCGCAc- -3' miRNA: 3'- aGCA----UUGCG----CUGCGGCCA--CUGCGUug -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 98130 | 0.66 | 0.981912 |
Target: 5'- cUCG-AACcagGCGGCGgCGGUG-CGCAucGCg -3' miRNA: 3'- -AGCaUUG---CGCUGCgGCCACuGCGU--UG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 153348 | 0.66 | 0.981912 |
Target: 5'- uUCGggGACgGCGGCGCCG---ACGCGAUc -3' miRNA: 3'- -AGCa-UUG-CGCUGCGGCcacUGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 76166 | 0.66 | 0.981912 |
Target: 5'- gUCGUcguCGCGaucaGCGUCGaucGACGCAACa -3' miRNA: 3'- -AGCAuu-GCGC----UGCGGCca-CUGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 69413 | 0.66 | 0.981912 |
Target: 5'- ---cGACGgGGCGCCaGGUGcGCGcCGACc -3' miRNA: 3'- agcaUUGCgCUGCGG-CCAC-UGC-GUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 66625 | 0.66 | 0.981912 |
Target: 5'- cCGcgGGCuGCGGCGCUGcGUGGCG-GACg -3' miRNA: 3'- aGCa-UUG-CGCUGCGGC-CACUGCgUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 42091 | 0.66 | 0.981912 |
Target: 5'- aUGU-GCGCGuCGCCGGcgccGACGUAc- -3' miRNA: 3'- aGCAuUGCGCuGCGGCCa---CUGCGUug -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 67341 | 0.66 | 0.981912 |
Target: 5'- aCGUA-CGCGAgagggaagccgcUGCCGGUGuacaucauCGUGACg -3' miRNA: 3'- aGCAUuGCGCU------------GCGGCCACu-------GCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 60429 | 0.66 | 0.981714 |
Target: 5'- aCGUGAcggccccCGCGAaccgGCCGGaGcCGCGACa -3' miRNA: 3'- aGCAUU-------GCGCUg---CGGCCaCuGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 7814 | 0.66 | 0.981314 |
Target: 5'- ---gGugGCG-UGCCGGUGaauggggucgugucGCGCAACc -3' miRNA: 3'- agcaUugCGCuGCGGCCAC--------------UGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 164658 | 0.66 | 0.980701 |
Target: 5'- gCGgcGCGCGuCGCCaGGUcGAuccgaccgacccaccCGCAGCu -3' miRNA: 3'- aGCauUGCGCuGCGG-CCA-CU---------------GCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 99666 | 0.66 | 0.979861 |
Target: 5'- cCGgcgGCGCGGCGCCgacagcguccGGUGACaaagaGCGAg -3' miRNA: 3'- aGCau-UGCGCUGCGG----------CCACUG-----CGUUg -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 57464 | 0.66 | 0.979861 |
Target: 5'- gUCGUGGCGaUGGCGCggCGGUgGugGUGAg -3' miRNA: 3'- -AGCAUUGC-GCUGCG--GCCA-CugCGUUg -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 105658 | 0.66 | 0.979861 |
Target: 5'- uUCGcGGCG-GAUGCCgcGGUGACGauCGACa -3' miRNA: 3'- -AGCaUUGCgCUGCGG--CCACUGC--GUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 29002 | 0.66 | 0.979861 |
Target: 5'- -gGUGGCGaGGCGCCGcGcGcACGCGGCc -3' miRNA: 3'- agCAUUGCgCUGCGGC-CaC-UGCGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home