miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 13810 0.66 0.981912
Target:  5'- -aGUAGCGCcGCGCCuuuacGUcACGCGGCa -3'
miRNA:   3'- agCAUUGCGcUGCGGc----CAcUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 30700 0.66 0.975249
Target:  5'- cCGU--CGCGACGUCgaGGUGGCG-GACg -3'
miRNA:   3'- aGCAuuGCGCUGCGG--CCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 121084 0.66 0.975249
Target:  5'- gUCGUcGGCGUacUGCCGcaGGCGCAGCg -3'
miRNA:   3'- -AGCA-UUGCGcuGCGGCcaCUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 225139 0.66 0.977412
Target:  5'- cUCGgGACGCgGACGCUccuccugGGUGACcgagccgaggGCGGCg -3'
miRNA:   3'- -AGCaUUGCG-CUGCGG-------CCACUG----------CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 57464 0.66 0.979861
Target:  5'- gUCGUGGCGaUGGCGCggCGGUgGugGUGAg -3'
miRNA:   3'- -AGCAUUGC-GCUGCG--GCCA-CugCGUUg -5'
15931 3' -54.6 NC_004065.1 + 35127 0.66 0.983801
Target:  5'- aCGUAGCaaCGAucucCGCCGGUGuacacCGCGAUc -3'
miRNA:   3'- aGCAUUGc-GCU----GCGGCCACu----GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 110697 0.66 0.983801
Target:  5'- gUGUGACGUGA-GCCGccGcCGCGACu -3'
miRNA:   3'- aGCAUUGCGCUgCGGCcaCuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 69413 0.66 0.981912
Target:  5'- ---cGACGgGGCGCCaGGUGcGCGcCGACc -3'
miRNA:   3'- agcaUUGCgCUGCGG-CCAC-UGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 12941 0.66 0.979861
Target:  5'- uUCGc--CGCGACGaucuauucuuUCGGUGcCGCAACc -3'
miRNA:   3'- -AGCauuGCGCUGC----------GGCCACuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 35421 0.66 0.975249
Target:  5'- gCGUGGaaguUGuCGACGCUGGUacCGCGACu -3'
miRNA:   3'- aGCAUU----GC-GCUGCGGCCAcuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 105128 0.66 0.983801
Target:  5'- cCGcugGACGCGGCGCacaucgaGGa-GCGCAACc -3'
miRNA:   3'- aGCa--UUGCGCUGCGg------CCacUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 116786 0.66 0.979431
Target:  5'- uUCGguuGCGCGGCcacguacguguugGCCGGUaccgaccGGgGCAGCg -3'
miRNA:   3'- -AGCau-UGCGCUG-------------CGGCCA-------CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 105215 0.66 0.975249
Target:  5'- uUCGUgGACGCccggcgGACGUCGGacgaggagauggUGGCGCAGa -3'
miRNA:   3'- -AGCA-UUGCG------CUGCGGCC------------ACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 135131 0.66 0.977643
Target:  5'- cCGggcgGGCGCGGCG--GGUGAUGaCGACg -3'
miRNA:   3'- aGCa---UUGCGCUGCggCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 42091 0.66 0.981912
Target:  5'- aUGU-GCGCGuCGCCGGcgccGACGUAc- -3'
miRNA:   3'- aGCAuUGCGCuGCGGCCa---CUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 67341 0.66 0.981912
Target:  5'- aCGUA-CGCGAgagggaagccgcUGCCGGUGuacaucauCGUGACg -3'
miRNA:   3'- aGCAUuGCGCU------------GCGGCCACu-------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 105658 0.66 0.979861
Target:  5'- uUCGcGGCG-GAUGCCgcGGUGACGauCGACa -3'
miRNA:   3'- -AGCaUUGCgCUGCGG--CCACUGC--GUUG- -5'
15931 3' -54.6 NC_004065.1 + 66625 0.66 0.981912
Target:  5'- cCGcgGGCuGCGGCGCUGcGUGGCG-GACg -3'
miRNA:   3'- aGCa-UUG-CGCUGCGGC-CACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 164658 0.66 0.980701
Target:  5'- gCGgcGCGCGuCGCCaGGUcGAuccgaccgacccaccCGCAGCu -3'
miRNA:   3'- aGCauUGCGCuGCGG-CCA-CU---------------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 83317 0.66 0.975249
Target:  5'- gUCGUcgAGCGCGGCGUCgcccaugucgugGGUaACGCAGa -3'
miRNA:   3'- -AGCA--UUGCGCUGCGG------------CCAcUGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.