miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 45982 0.67 0.972674
Target:  5'- gUGUAACgGCGAC-CUGGgcgccGugGCGGCg -3'
miRNA:   3'- aGCAUUG-CGCUGcGGCCa----CugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 71332 0.67 0.963795
Target:  5'- gUUGggcauCGCGGCGCUGGagaaguacaucgUGGCGCAccGCa -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCC------------ACUGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 135538 0.67 0.966953
Target:  5'- cCGUcGACGuCGACGUCGGacgGGCGgaCGACg -3'
miRNA:   3'- aGCA-UUGC-GCUGCGGCCa--CUGC--GUUG- -5'
15931 3' -54.6 NC_004065.1 + 96579 0.67 0.96991
Target:  5'- aCGagcCGCGACGCgUGGcGACGCuGCa -3'
miRNA:   3'- aGCauuGCGCUGCG-GCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 63103 0.67 0.972674
Target:  5'- cUGUAGCGUgccgaGACaGCCGGUGGacggccCGUAGCc -3'
miRNA:   3'- aGCAUUGCG-----CUG-CGGCCACU------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 229281 0.67 0.966953
Target:  5'- cCGcGACGCGgcACGCUGGUcGCGUuGCg -3'
miRNA:   3'- aGCaUUGCGC--UGCGGCCAcUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 163635 0.67 0.96991
Target:  5'- aUCG-AGCgGCGGCGgCGGcGGCaGCGGCa -3'
miRNA:   3'- -AGCaUUG-CGCUGCgGCCaCUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 145763 0.67 0.963795
Target:  5'- aUCGcguCGCG-CGCCGGUcgcgGGCGCucGCa -3'
miRNA:   3'- -AGCauuGCGCuGCGGCCA----CUGCGu-UG- -5'
15931 3' -54.6 NC_004065.1 + 98597 0.67 0.963795
Target:  5'- cCGUcuCuuGACGCCGGUc-CGCAGCa -3'
miRNA:   3'- aGCAuuGcgCUGCGGCCAcuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 195332 0.67 0.956861
Target:  5'- uUCGUGcuccuGgGCGGCGCCcgcgucuugaaGGUGGC-CAACa -3'
miRNA:   3'- -AGCAU-----UgCGCUGCGG-----------CCACUGcGUUG- -5'
15931 3' -54.6 NC_004065.1 + 218240 0.67 0.956861
Target:  5'- aUGUGACGgugauaaaCGACGUCagguGGUGACGgAACa -3'
miRNA:   3'- aGCAUUGC--------GCUGCGG----CCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 186682 0.67 0.960433
Target:  5'- gUCGggGACGCGGCGCgUGG-GGCGUc-- -3'
miRNA:   3'- -AGCa-UUGCGCUGCG-GCCaCUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 82861 0.67 0.963795
Target:  5'- -gGUGGCGaagaGcACGCCgcucauggccacGGUGAUGCGGCa -3'
miRNA:   3'- agCAUUGCg---C-UGCGG------------CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 151356 0.67 0.963795
Target:  5'- cUCGggcgcCGCGGCGCCGGccgcuGCGCuGGCg -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCCac---UGCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 229539 0.67 0.972674
Target:  5'- cCGcgGACGCGGCGCgCGGcccgGAgGCuGACu -3'
miRNA:   3'- aGCa-UUGCGCUGCG-GCCa---CUgCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 121444 0.67 0.966953
Target:  5'- gCGUGcgguuggaGCGGauggUGCCGGUGucgGCGCAGCg -3'
miRNA:   3'- aGCAUug------CGCU----GCGGCCAC---UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 186377 0.67 0.972674
Target:  5'- -gGUGAUGCGACGgCGGaGGCuGCGu- -3'
miRNA:   3'- agCAUUGCGCUGCgGCCaCUG-CGUug -5'
15931 3' -54.6 NC_004065.1 + 122931 0.67 0.955372
Target:  5'- cCG-AACcCGACGCCGGcguuccagacgagGAUGCAGCu -3'
miRNA:   3'- aGCaUUGcGCUGCGGCCa------------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 76746 0.67 0.961803
Target:  5'- aCG-GGCGCGGCGCCGGcgGccucgucaucguccgGCGCAu- -3'
miRNA:   3'- aGCaUUGCGCUGCGGCCa-C---------------UGCGUug -5'
15931 3' -54.6 NC_004065.1 + 71949 0.67 0.963795
Target:  5'- gUCGgagGCGaCGcCGCCGGUGGagccggGCAGCc -3'
miRNA:   3'- -AGCau-UGC-GCuGCGGCCACUg-----CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.