miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 229539 0.67 0.972674
Target:  5'- cCGcgGACGCGGCGCgCGGcccgGAgGCuGACu -3'
miRNA:   3'- aGCa-UUGCGCUGCG-GCCa---CUgCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 83179 0.67 0.966953
Target:  5'- aCGgcGCGCGACGUCGcUGA-GCAc- -3'
miRNA:   3'- aGCauUGCGCUGCGGCcACUgCGUug -5'
15931 3' -54.6 NC_004065.1 + 106563 0.67 0.966953
Target:  5'- cUCGcAGCGCGGguCGCUGGgcGACGUGAUc -3'
miRNA:   3'- -AGCaUUGCGCU--GCGGCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 71332 0.67 0.963795
Target:  5'- gUUGggcauCGCGGCGCUGGagaaguacaucgUGGCGCAccGCa -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCC------------ACUGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 98597 0.67 0.963795
Target:  5'- cCGUcuCuuGACGCCGGUc-CGCAGCa -3'
miRNA:   3'- aGCAuuGcgCUGCGGCCAcuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 71949 0.67 0.963795
Target:  5'- gUCGgagGCGaCGcCGCCGGUGGagccggGCAGCc -3'
miRNA:   3'- -AGCau-UGC-GCuGCGGCCACUg-----CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 76746 0.67 0.961803
Target:  5'- aCG-GGCGCGGCGCCGGcgGccucgucaucguccgGCGCAu- -3'
miRNA:   3'- aGCaUUGCGCUGCGGCCa-C---------------UGCGUug -5'
15931 3' -54.6 NC_004065.1 + 139702 0.67 0.960433
Target:  5'- uUCGcgGACGCGcuUGCCGGaugaggGACGUGGCc -3'
miRNA:   3'- -AGCa-UUGCGCu-GCGGCCa-----CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 133335 0.67 0.960433
Target:  5'- cCGUccugAACcugGCGGuguuguucuUGCCGGUGACGCGAa -3'
miRNA:   3'- aGCA----UUG---CGCU---------GCGGCCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 186913 0.67 0.96991
Target:  5'- uUCGcgAGCGCGgaucgGCGCCGG-GuCGCGGa -3'
miRNA:   3'- -AGCa-UUGCGC-----UGCGGCCaCuGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 103723 0.67 0.960433
Target:  5'- cUCGggacGACGCGccuccuucgGCGUCGGUucGCGCGGCg -3'
miRNA:   3'- -AGCa---UUGCGC---------UGCGGCCAc-UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 173441 0.67 0.960433
Target:  5'- -gGUGACGUucGACGuaCCGGUGGCGgcgcuCGACg -3'
miRNA:   3'- agCAUUGCG--CUGC--GGCCACUGC-----GUUG- -5'
15931 3' -54.6 NC_004065.1 + 53855 0.67 0.959383
Target:  5'- uUCGcGGCGgucGCGCCGGgauggccacuccguUGGCGCGACg -3'
miRNA:   3'- -AGCaUUGCgc-UGCGGCC--------------ACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 34229 0.67 0.96991
Target:  5'- aUGUGGucucucCGCGGCGCCcagaGACGCGACc -3'
miRNA:   3'- aGCAUU------GCGCUGCGGcca-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 136608 0.68 0.953075
Target:  5'- -gGUGggguGCGgGGCGCUGGUccGAgGCGGCg -3'
miRNA:   3'- agCAU----UGCgCUGCGGCCA--CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 216319 0.68 0.949072
Target:  5'- cUGUAGacuuuuCGGCGUCGGUGACGguAUa -3'
miRNA:   3'- aGCAUUgc----GCUGCGGCCACUGCguUG- -5'
15931 3' -54.6 NC_004065.1 + 78601 0.68 0.939023
Target:  5'- gUCG-AACGCGACGUCgucgcgccgccugaGGUGaACGCGGu -3'
miRNA:   3'- -AGCaUUGCGCUGCGG--------------CCAC-UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 164467 0.68 0.944848
Target:  5'- -gGUAcuCGCGAccCGCCGGcGACGCGc- -3'
miRNA:   3'- agCAUu-GCGCU--GCGGCCaCUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 147894 0.68 0.943976
Target:  5'- gCGUc-CGCGcCGCCGGauacgucagccgGGCGCAGCu -3'
miRNA:   3'- aGCAuuGCGCuGCGGCCa-----------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 34178 0.68 0.949072
Target:  5'- cCGUGAguUGaCGGCGCCGGcgccaGACGgAGCa -3'
miRNA:   3'- aGCAUU--GC-GCUGCGGCCa----CUGCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.