miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 152193 0.68 0.944848
Target:  5'- gUUGUuGCGCGAguaGuuGGUGAUGCGc- -3'
miRNA:   3'- -AGCAuUGCGCUg--CggCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 164467 0.68 0.944848
Target:  5'- -gGUAcuCGCGAccCGCCGGcGACGCGc- -3'
miRNA:   3'- agCAUu-GCGCU--GCGGCCaCUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 216319 0.68 0.949072
Target:  5'- cUGUAGacuuuuCGGCGUCGGUGACGguAUa -3'
miRNA:   3'- aGCAUUgc----GCUGCGGCCACUGCguUG- -5'
15931 3' -54.6 NC_004065.1 + 136608 0.68 0.953075
Target:  5'- -gGUGggguGCGgGGCGCUGGUccGAgGCGGCg -3'
miRNA:   3'- agCAU----UGCgCUGCGGCCA--CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 30775 0.68 0.949072
Target:  5'- gUCGgcgGACGCgGACGCCGacGAUGaCGACu -3'
miRNA:   3'- -AGCa--UUGCG-CUGCGGCcaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 35245 0.68 0.949072
Target:  5'- aUCGcccuGCGCGAC-CCGGUcucgggacGGCGCGAg -3'
miRNA:   3'- -AGCau--UGCGCUGcGGCCA--------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 62381 0.68 0.953075
Target:  5'- gCGgggGugGUGGCGgCGGggGugGCGGCc -3'
miRNA:   3'- aGCa--UugCGCUGCgGCCa-CugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 78601 0.68 0.939023
Target:  5'- gUCG-AACGCGACGUCgucgcgccgccugaGGUGaACGCGGu -3'
miRNA:   3'- -AGCaUUGCGCUGCGG--------------CCAC-UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 147894 0.68 0.943976
Target:  5'- gCGUc-CGCGcCGCCGGauacgucagccgGGCGCAGCu -3'
miRNA:   3'- aGCAuuGCGCuGCGGCCa-----------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 43262 0.68 0.944413
Target:  5'- aCGUGGCG-GACGaagggggggauguCCGGcGugGCGACg -3'
miRNA:   3'- aGCAUUGCgCUGC-------------GGCCaCugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 143138 0.69 0.902937
Target:  5'- cCGgcGcCGCGaccuGCGUCGGUGAUGaCGACg -3'
miRNA:   3'- aGCauU-GCGC----UGCGGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 143099 0.69 0.93083
Target:  5'- aCGUGGgguccaucuuCGCGGCGCCGGgaaagGuCGuCGACa -3'
miRNA:   3'- aGCAUU----------GCGCUGCGGCCa----CuGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 97644 0.69 0.902321
Target:  5'- gCGgcACGgaGACGCCGGUuuguucgcgaucuGGCGCAGg -3'
miRNA:   3'- aGCauUGCg-CUGCGGCCA-------------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 42056 0.69 0.914772
Target:  5'- aCGgcGUGCuGGCGCUGGUGugGCuGACc -3'
miRNA:   3'- aGCauUGCG-CUGCGGCCACugCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 135366 0.69 0.918147
Target:  5'- ---aGACGCGGCGaguucuucagggaCGGUGACGCGc- -3'
miRNA:   3'- agcaUUGCGCUGCg------------GCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 207367 0.69 0.920352
Target:  5'- gUGUcACGCGGCauCCGGUGAUGCuuCc -3'
miRNA:   3'- aGCAuUGCGCUGc-GGCCACUGCGuuG- -5'
15931 3' -54.6 NC_004065.1 + 117398 0.69 0.925705
Target:  5'- cUCGgccGCGCG-CGCUGGgcuCGCGGCg -3'
miRNA:   3'- -AGCau-UGCGCuGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 123672 0.69 0.93083
Target:  5'- aCGUGGCGCGcUGCCcGUG-CaGCAGCg -3'
miRNA:   3'- aGCAUUGCGCuGCGGcCACuG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 114863 0.69 0.914772
Target:  5'- gUCGggGCGCGGCGCCc--GACGaCGAUg -3'
miRNA:   3'- -AGCauUGCGCUGCGGccaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 199995 0.69 0.925705
Target:  5'- cUCGUu-CGUGcccgucaccaccGCGCCGGUGacggucGCGCAGCc -3'
miRNA:   3'- -AGCAuuGCGC------------UGCGGCCAC------UGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.