miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 720 1.11 0.005061
Target:  5'- gUCGUAACGCGACGCCGGUGACGCAACg -3'
miRNA:   3'- -AGCAUUGCGCUGCGGCCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 32220 0.81 0.359714
Target:  5'- aCGUGGCGCcgcgGGCGCUGGUGAC-CAACg -3'
miRNA:   3'- aGCAUUGCG----CUGCGGCCACUGcGUUG- -5'
15931 3' -54.6 NC_004065.1 + 163484 0.8 0.408234
Target:  5'- cCGUcg-GCGGCGCCGGUGGCgGCGGCu -3'
miRNA:   3'- aGCAuugCGCUGCGGCCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 184786 0.77 0.533663
Target:  5'- ---cGACGCGACGggcggaggaggaCGGUGACGCAACg -3'
miRNA:   3'- agcaUUGCGCUGCg-----------GCCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 187930 0.76 0.574675
Target:  5'- aCGU-ACGuCGGCGCCGGcGACGCGcACa -3'
miRNA:   3'- aGCAuUGC-GCUGCGGCCaCUGCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 77626 0.76 0.584557
Target:  5'- cCGUGACGCcgacGGCGCUgucccugaugaaGGUGAUGCGGCa -3'
miRNA:   3'- aGCAUUGCG----CUGCGG------------CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 67627 0.75 0.654268
Target:  5'- cCGUAcgGCGUucgaGAUGCCGGUGGCGUcgAGCg -3'
miRNA:   3'- aGCAU--UGCG----CUGCGGCCACUGCG--UUG- -5'
15931 3' -54.6 NC_004065.1 + 48101 0.75 0.654268
Target:  5'- --cUGugGCGGCGgCGGUGGCgGCGGCg -3'
miRNA:   3'- agcAUugCGCUGCgGCCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 82310 0.74 0.678107
Target:  5'- cCGUAGCGCGGCguccagcucauccgaGCCGGUGGuguCGCuGACg -3'
miRNA:   3'- aGCAUUGCGCUG---------------CGGCCACU---GCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 166135 0.74 0.703696
Target:  5'- gUCGgcagaGACGuCGGCGCCGGcGGCaGCGGCg -3'
miRNA:   3'- -AGCa----UUGC-GCUGCGGCCaCUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 184498 0.74 0.713442
Target:  5'- cCGc--CGCGGCGCCgGGUGGCGUAGa -3'
miRNA:   3'- aGCauuGCGCUGCGG-CCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 102015 0.73 0.722158
Target:  5'- gUCGUAguugGCGCGGCGggccaccUCGGUGAccCGCGGCg -3'
miRNA:   3'- -AGCAU----UGCGCUGC-------GGCCACU--GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 187393 0.73 0.732729
Target:  5'- cUGgcGCGCGGCG-CGGUGugGCGu- -3'
miRNA:   3'- aGCauUGCGCUGCgGCCACugCGUug -5'
15931 3' -54.6 NC_004065.1 + 109246 0.73 0.742253
Target:  5'- gCGgua-GCGGCGUCGGUGACGaUGACg -3'
miRNA:   3'- aGCauugCGCUGCGGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 65823 0.73 0.751685
Target:  5'- aUCGUGAaCGCGAUGCCGGcgGAgaucCGCGcGCa -3'
miRNA:   3'- -AGCAUU-GCGCUGCGGCCa-CU----GCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 100574 0.73 0.760088
Target:  5'- cUCG-AGCGCGACGCCGGagaccuuagguaUGAuggcgguCGCGGCc -3'
miRNA:   3'- -AGCaUUGCGCUGCGGCC------------ACU-------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 133038 0.73 0.761017
Target:  5'- aCGUcgcagcAGCGCGACGgaCGGccGGCGCAGCa -3'
miRNA:   3'- aGCA------UUGCGCUGCg-GCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 211548 0.73 0.761017
Target:  5'- aCG-AAUGCGGCGaCGGUGAuCGCGAUg -3'
miRNA:   3'- aGCaUUGCGCUGCgGCCACU-GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 205422 0.73 0.77024
Target:  5'- uUCGcAACaccgGCGGCGgCGGUGGCgGCGACg -3'
miRNA:   3'- -AGCaUUG----CGCUGCgGCCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 38145 0.72 0.779346
Target:  5'- gCGUGcgcAUGCuGACGCUGGaaGACGCGGCg -3'
miRNA:   3'- aGCAU---UGCG-CUGCGGCCa-CUGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.