miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 80381 0.72 0.782954
Target:  5'- gCGgcGCGUgcagggccugccgacGGCGCCGGUGACGguGg -3'
miRNA:   3'- aGCauUGCG---------------CUGCGGCCACUGCguUg -5'
15931 3' -54.6 NC_004065.1 + 200780 0.72 0.788327
Target:  5'- cUCGUcGCGCGGCGgUGGcgGGCGaCGGCg -3'
miRNA:   3'- -AGCAuUGCGCUGCgGCCa-CUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 150788 0.72 0.797174
Target:  5'- cCGUcAGCGUGAucCGCUGGUG-CGCGAUg -3'
miRNA:   3'- aGCA-UUGCGCU--GCGGCCACuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 200993 0.72 0.809321
Target:  5'- aCGgguCGCGACGCCGGUcugacucgaggccgcGugcGCGCGGCg -3'
miRNA:   3'- aGCauuGCGCUGCGGCCA---------------C---UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 103530 0.72 0.814436
Target:  5'- gCGcAugGCGACGCgGGUGcagcGCGcCAACa -3'
miRNA:   3'- aGCaUugCGCUGCGgCCAC----UGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 164522 0.72 0.814436
Target:  5'- gUCGUAgcgcaGCGCGAacaGCCGGuUGAUGUugAACg -3'
miRNA:   3'- -AGCAU-----UGCGCUg--CGGCC-ACUGCG--UUG- -5'
15931 3' -54.6 NC_004065.1 + 40310 0.71 0.822834
Target:  5'- aCGUGuuUGCGAUGCCGGUGuCGUcguggaggGACa -3'
miRNA:   3'- aGCAUu-GCGCUGCGGCCACuGCG--------UUG- -5'
15931 3' -54.6 NC_004065.1 + 48743 0.71 0.831068
Target:  5'- gUCGUAGCaGUaGAugcCGCCGGUGGCGCc-- -3'
miRNA:   3'- -AGCAUUG-CG-CU---GCGGCCACUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 87207 0.71 0.831068
Target:  5'- gUCGUugauguACGCauacGACGCCGGUgagaacGACGCGAg -3'
miRNA:   3'- -AGCAu-----UGCG----CUGCGGCCA------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 133731 0.71 0.839129
Target:  5'- gUCGUGugGaCGGCGUCcGUGACGCc-- -3'
miRNA:   3'- -AGCAUugC-GCUGCGGcCACUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 71743 0.71 0.846232
Target:  5'- -gGUGACGCGGCGCuaccgguCGGUGAcCGUguuGGCg -3'
miRNA:   3'- agCAUUGCGCUGCG-------GCCACU-GCG---UUG- -5'
15931 3' -54.6 NC_004065.1 + 135664 0.71 0.847012
Target:  5'- cCGUAACGCG-CGUCGGgggGcucGCGCAGa -3'
miRNA:   3'- aGCAUUGCGCuGCGGCCa--C---UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 1543 0.71 0.847012
Target:  5'- uUCGcucccCGCGACGCCGGacuCGCGAUg -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 120150 0.71 0.847012
Target:  5'- gCGgccGCgGCGACGCCGGUGGCaccgccCGGCa -3'
miRNA:   3'- aGCau-UG-CGCUGCGGCCACUGc-----GUUG- -5'
15931 3' -54.6 NC_004065.1 + 176179 0.71 0.854709
Target:  5'- aCG-AugGCGACGgCGGcgGAgGCAGCu -3'
miRNA:   3'- aGCaUugCGCUGCgGCCa-CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 187031 0.71 0.854709
Target:  5'- gCGgcgGCGCGGCGUCugaGGUGAUGCGuaGCa -3'
miRNA:   3'- aGCau-UGCGCUGCGG---CCACUGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 31008 0.71 0.862215
Target:  5'- -gGUGGCGagauggaGAgGCCGGUGACgGCGAa -3'
miRNA:   3'- agCAUUGCg------CUgCGGCCACUG-CGUUg -5'
15931 3' -54.6 NC_004065.1 + 68227 0.71 0.862215
Target:  5'- gCGggugAGCGCGuCGgCGGUGACGagGACg -3'
miRNA:   3'- aGCa---UUGCGCuGCgGCCACUGCg-UUG- -5'
15931 3' -54.6 NC_004065.1 + 44514 0.71 0.862215
Target:  5'- uUCGUccggcGGCGCGAUGuuaCCGGggacgGugGCGGCg -3'
miRNA:   3'- -AGCA-----UUGCGCUGC---GGCCa----CugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 77366 0.71 0.862215
Target:  5'- aCGcAGCGCGACGagcacCCGGUGAUGguGg -3'
miRNA:   3'- aGCaUUGCGCUGC-----GGCCACUGCguUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.