miRNA display CGI


Results 41 - 60 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 31629 0.7 0.869524
Target:  5'- uUCGUGcgGCuGaCGACGCCGGgcuacggGACGuCGGCg -3'
miRNA:   3'- -AGCAU--UG-C-GCUGCGGCCa------CUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 219255 0.7 0.869524
Target:  5'- ----cACGCGcCGCCGGUGuaacuCGCGAUa -3'
miRNA:   3'- agcauUGCGCuGCGGCCACu----GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 159890 0.7 0.869524
Target:  5'- gUCGUAACGUuaguucguuCGUCGGUGGCGaGACg -3'
miRNA:   3'- -AGCAUUGCGcu-------GCGGCCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 99604 0.7 0.87663
Target:  5'- -aGUAG-GUGACGCCGGUGAgGaCGAa -3'
miRNA:   3'- agCAUUgCGCUGCGGCCACUgC-GUUg -5'
15931 3' -54.6 NC_004065.1 + 141148 0.7 0.87663
Target:  5'- gCGU--UGCGGCGUCGGUcacuucGACGUGACg -3'
miRNA:   3'- aGCAuuGCGCUGCGGCCA------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 168555 0.7 0.87663
Target:  5'- -gGUGGCaGCGGCGgCGGcGGCGaCAGCg -3'
miRNA:   3'- agCAUUG-CGCUGCgGCCaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 8739 0.7 0.883528
Target:  5'- aCGUGACGaccgGAgGCCguGGUGGCgGCGGCa -3'
miRNA:   3'- aGCAUUGCg---CUgCGG--CCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 4368 0.7 0.883528
Target:  5'- gCGUGgaGCGCGACGgCGGcGGCGgGAg -3'
miRNA:   3'- aGCAU--UGCGCUGCgGCCaCUGCgUUg -5'
15931 3' -54.6 NC_004065.1 + 120104 0.7 0.890214
Target:  5'- cCGgGACGCGACGgCGGc--CGCGGCg -3'
miRNA:   3'- aGCaUUGCGCUGCgGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 66473 0.7 0.896685
Target:  5'- cUGUAcGCGCGGCuGUCGGaGACGCuGCa -3'
miRNA:   3'- aGCAU-UGCGCUG-CGGCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 97644 0.69 0.902321
Target:  5'- gCGgcACGgaGACGCCGGUuuguucgcgaucuGGCGCAGg -3'
miRNA:   3'- aGCauUGCg-CUGCGGCCA-------------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 143138 0.69 0.902937
Target:  5'- cCGgcGcCGCGaccuGCGUCGGUGAUGaCGACg -3'
miRNA:   3'- aGCauU-GCGC----UGCGGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 86893 0.69 0.914772
Target:  5'- aCGcagguCGCGGCGCCGGUcucgcccucggcGGCGCGcGCg -3'
miRNA:   3'- aGCauu--GCGCUGCGGCCA------------CUGCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 59754 0.69 0.914772
Target:  5'- cCGac-CGCGugGCCgauGGUGGCgGCGGCg -3'
miRNA:   3'- aGCauuGCGCugCGG---CCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 42056 0.69 0.914772
Target:  5'- aCGgcGUGCuGGCGCUGGUGugGCuGACc -3'
miRNA:   3'- aGCauUGCG-CUGCGGCCACugCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 30914 0.69 0.914772
Target:  5'- cUCGUGucCGuCGAcauCGCCGG-GACGCAGa -3'
miRNA:   3'- -AGCAUu-GC-GCU---GCGGCCaCUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 114863 0.69 0.914772
Target:  5'- gUCGggGCGCGGCGCCc--GACGaCGAUg -3'
miRNA:   3'- -AGCauUGCGCUGCGGccaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 135366 0.69 0.918147
Target:  5'- ---aGACGCGGCGaguucuucagggaCGGUGACGCGc- -3'
miRNA:   3'- agcaUUGCGCUGCg------------GCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 207367 0.69 0.920352
Target:  5'- gUGUcACGCGGCauCCGGUGAUGCuuCc -3'
miRNA:   3'- aGCAuUGCGCUGc-GGCCACUGCGuuG- -5'
15931 3' -54.6 NC_004065.1 + 117398 0.69 0.925705
Target:  5'- cUCGgccGCGCG-CGCUGGgcuCGCGGCg -3'
miRNA:   3'- -AGCau-UGCGCuGCGGCCacuGCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.