miRNA display CGI


Results 61 - 80 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 82772 0.69 0.925705
Target:  5'- cUCGgagaGCaGGCGuCCGGUGGCGcCGACc -3'
miRNA:   3'- -AGCauugCG-CUGC-GGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 87501 0.69 0.925705
Target:  5'- gUCGUGAaacCGCGuCGCugacaCGGUGucgacGCGCAGCg -3'
miRNA:   3'- -AGCAUU---GCGCuGCG-----GCCAC-----UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 199995 0.69 0.925705
Target:  5'- cUCGUu-CGUGcccgucaccaccGCGCCGGUGacggucGCGCAGCc -3'
miRNA:   3'- -AGCAuuGCGC------------UGCGGCCAC------UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 56964 0.69 0.93083
Target:  5'- aCGgcGCgGgGACGCUGGUGAUGUucCg -3'
miRNA:   3'- aGCauUG-CgCUGCGGCCACUGCGuuG- -5'
15931 3' -54.6 NC_004065.1 + 123672 0.69 0.93083
Target:  5'- aCGUGGCGCGcUGCCcGUG-CaGCAGCg -3'
miRNA:   3'- aGCAUUGCGCuGCGGcCACuG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 143099 0.69 0.93083
Target:  5'- aCGUGGgguccaucuuCGCGGCGCCGGgaaagGuCGuCGACa -3'
miRNA:   3'- aGCAUU----------GCGCUGCGGCCa----CuGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 78601 0.68 0.939023
Target:  5'- gUCG-AACGCGACGUCgucgcgccgccugaGGUGaACGCGGu -3'
miRNA:   3'- -AGCaUUGCGCUGCGG--------------CCAC-UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 113933 0.68 0.940401
Target:  5'- gUCGacGACGCGGCGCuCGGgggcuggGACGgaGACg -3'
miRNA:   3'- -AGCa-UUGCGCUGCG-GCCa------CUGCg-UUG- -5'
15931 3' -54.6 NC_004065.1 + 65550 0.68 0.940401
Target:  5'- aCGcugGGCGCGuCGCCGGcgGGuCGCGAg -3'
miRNA:   3'- aGCa--UUGCGCuGCGGCCa-CU-GCGUUg -5'
15931 3' -54.6 NC_004065.1 + 77960 0.68 0.940401
Target:  5'- aCGUGACGUcgagccccgaGACGCUGGc--CGCGGCg -3'
miRNA:   3'- aGCAUUGCG----------CUGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 147894 0.68 0.943976
Target:  5'- gCGUc-CGCGcCGCCGGauacgucagccgGGCGCAGCu -3'
miRNA:   3'- aGCAuuGCGCuGCGGCCa-----------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 43262 0.68 0.944413
Target:  5'- aCGUGGCG-GACGaagggggggauguCCGGcGugGCGACg -3'
miRNA:   3'- aGCAUUGCgCUGC-------------GGCCaCugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 164467 0.68 0.944848
Target:  5'- -gGUAcuCGCGAccCGCCGGcGACGCGc- -3'
miRNA:   3'- agCAUu-GCGCU--GCGGCCaCUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 152193 0.68 0.944848
Target:  5'- gUUGUuGCGCGAguaGuuGGUGAUGCGc- -3'
miRNA:   3'- -AGCAuUGCGCUg--CggCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 35245 0.68 0.949072
Target:  5'- aUCGcccuGCGCGAC-CCGGUcucgggacGGCGCGAg -3'
miRNA:   3'- -AGCau--UGCGCUGcGGCCA--------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 199498 0.68 0.949072
Target:  5'- aCGUAcgucucuucccACGCGGCgGCCGccacGUGcGCGCAGCc -3'
miRNA:   3'- aGCAU-----------UGCGCUG-CGGC----CAC-UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 34178 0.68 0.949072
Target:  5'- cCGUGAguUGaCGGCGCCGGcgccaGACGgAGCa -3'
miRNA:   3'- aGCAUU--GC-GCUGCGGCCa----CUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 30775 0.68 0.949072
Target:  5'- gUCGgcgGACGCgGACGCCGacGAUGaCGACu -3'
miRNA:   3'- -AGCa--UUGCG-CUGCGGCcaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 216319 0.68 0.949072
Target:  5'- cUGUAGacuuuuCGGCGUCGGUGACGguAUa -3'
miRNA:   3'- aGCAUUgc----GCUGCGGCCACUGCguUG- -5'
15931 3' -54.6 NC_004065.1 + 54562 0.68 0.953075
Target:  5'- gCGUAACGCGGCGC-GGaGACuGCu-- -3'
miRNA:   3'- aGCAUUGCGCUGCGgCCaCUG-CGuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.