Results 81 - 100 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 54562 | 0.68 | 0.953075 |
Target: 5'- gCGUAACGCGGCGC-GGaGACuGCu-- -3' miRNA: 3'- aGCAUUGCGCUGCGgCCaCUG-CGuug -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 136608 | 0.68 | 0.953075 |
Target: 5'- -gGUGggguGCGgGGCGCUGGUccGAgGCGGCg -3' miRNA: 3'- agCAU----UGCgCUGCGGCCA--CUgCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 122931 | 0.67 | 0.955372 |
Target: 5'- cCG-AACcCGACGCCGGcguuccagacgagGAUGCAGCu -3' miRNA: 3'- aGCaUUGcGCUGCGGCCa------------CUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 218240 | 0.67 | 0.956861 |
Target: 5'- aUGUGACGgugauaaaCGACGUCagguGGUGACGgAACa -3' miRNA: 3'- aGCAUUGC--------GCUGCGG----CCACUGCgUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 104789 | 0.67 | 0.956861 |
Target: 5'- cUCGaGACGgGcaucgaGCUGGUGACGCGcuGCg -3' miRNA: 3'- -AGCaUUGCgCug----CGGCCACUGCGU--UG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 195332 | 0.67 | 0.956861 |
Target: 5'- uUCGUGcuccuGgGCGGCGCCcgcgucuugaaGGUGGC-CAACa -3' miRNA: 3'- -AGCAU-----UgCGCUGCGG-----------CCACUGcGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 53855 | 0.67 | 0.959383 |
Target: 5'- uUCGcGGCGgucGCGCCGGgauggccacuccguUGGCGCGACg -3' miRNA: 3'- -AGCaUUGCgc-UGCGGCC--------------ACUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 133335 | 0.67 | 0.960433 |
Target: 5'- cCGUccugAACcugGCGGuguuguucuUGCCGGUGACGCGAa -3' miRNA: 3'- aGCA----UUG---CGCU---------GCGGCCACUGCGUUg -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 139702 | 0.67 | 0.960433 |
Target: 5'- uUCGcgGACGCGcuUGCCGGaugaggGACGUGGCc -3' miRNA: 3'- -AGCa-UUGCGCu-GCGGCCa-----CUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 103723 | 0.67 | 0.960433 |
Target: 5'- cUCGggacGACGCGccuccuucgGCGUCGGUucGCGCGGCg -3' miRNA: 3'- -AGCa---UUGCGC---------UGCGGCCAc-UGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 186682 | 0.67 | 0.960433 |
Target: 5'- gUCGggGACGCGGCGCgUGG-GGCGUc-- -3' miRNA: 3'- -AGCa-UUGCGCUGCG-GCCaCUGCGuug -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 173441 | 0.67 | 0.960433 |
Target: 5'- -gGUGACGUucGACGuaCCGGUGGCGgcgcuCGACg -3' miRNA: 3'- agCAUUGCG--CUGC--GGCCACUGC-----GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 76746 | 0.67 | 0.961803 |
Target: 5'- aCG-GGCGCGGCGCCGGcgGccucgucaucguccgGCGCAu- -3' miRNA: 3'- aGCaUUGCGCUGCGGCCa-C---------------UGCGUug -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 71949 | 0.67 | 0.963795 |
Target: 5'- gUCGgagGCGaCGcCGCCGGUGGagccggGCAGCc -3' miRNA: 3'- -AGCau-UGC-GCuGCGGCCACUg-----CGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 98597 | 0.67 | 0.963795 |
Target: 5'- cCGUcuCuuGACGCCGGUc-CGCAGCa -3' miRNA: 3'- aGCAuuGcgCUGCGGCCAcuGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 71332 | 0.67 | 0.963795 |
Target: 5'- gUUGggcauCGCGGCGCUGGagaaguacaucgUGGCGCAccGCa -3' miRNA: 3'- -AGCauu--GCGCUGCGGCC------------ACUGCGU--UG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 151425 | 0.67 | 0.963795 |
Target: 5'- gCGgcGCGaCGACGUCGcGUucGACgGCGACg -3' miRNA: 3'- aGCauUGC-GCUGCGGC-CA--CUG-CGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 154150 | 0.67 | 0.963795 |
Target: 5'- cCGggcgGugGCGGCGgCGGcGGCgGCGGCu -3' miRNA: 3'- aGCa---UugCGCUGCgGCCaCUG-CGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 82861 | 0.67 | 0.963795 |
Target: 5'- -gGUGGCGaagaGcACGCCgcucauggccacGGUGAUGCGGCa -3' miRNA: 3'- agCAUUGCg---C-UGCGG------------CCACUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 145763 | 0.67 | 0.963795 |
Target: 5'- aUCGcguCGCG-CGCCGGUcgcgGGCGCucGCa -3' miRNA: 3'- -AGCauuGCGCuGCGGCCA----CUGCGu-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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