miRNA display CGI


Results 101 - 120 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 71949 0.67 0.963795
Target:  5'- gUCGgagGCGaCGcCGCCGGUGGagccggGCAGCc -3'
miRNA:   3'- -AGCau-UGC-GCuGCGGCCACUg-----CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 83179 0.67 0.966953
Target:  5'- aCGgcGCGCGACGUCGcUGA-GCAc- -3'
miRNA:   3'- aGCauUGCGCUGCGGCcACUgCGUug -5'
15931 3' -54.6 NC_004065.1 + 106563 0.67 0.966953
Target:  5'- cUCGcAGCGCGGguCGCUGGgcGACGUGAUc -3'
miRNA:   3'- -AGCaUUGCGCU--GCGGCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 121444 0.67 0.966953
Target:  5'- gCGUGcgguuggaGCGGauggUGCCGGUGucgGCGCAGCg -3'
miRNA:   3'- aGCAUug------CGCU----GCGGCCAC---UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 202572 0.67 0.966953
Target:  5'- cUCGc-GCGUGAUGCgCGGaGACGCggUg -3'
miRNA:   3'- -AGCauUGCGCUGCG-GCCaCUGCGuuG- -5'
15931 3' -54.6 NC_004065.1 + 135538 0.67 0.966953
Target:  5'- cCGUcGACGuCGACGUCGGacgGGCGgaCGACg -3'
miRNA:   3'- aGCA-UUGC-GCUGCGGCCa--CUGC--GUUG- -5'
15931 3' -54.6 NC_004065.1 + 70629 0.67 0.966953
Target:  5'- ---aAGCGCagcucucagGACGCUaGGUGGCGCGAUc -3'
miRNA:   3'- agcaUUGCG---------CUGCGG-CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 229281 0.67 0.966953
Target:  5'- cCGcGACGCGgcACGCUGGUcGCGUuGCg -3'
miRNA:   3'- aGCaUUGCGC--UGCGGCCAcUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 24028 0.67 0.969624
Target:  5'- aCGUaGACGCGAcagagguCGUCGGUGAggauggugaGCGGCg -3'
miRNA:   3'- aGCA-UUGCGCU-------GCGGCCACUg--------CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 186913 0.67 0.96991
Target:  5'- uUCGcgAGCGCGgaucgGCGCCGG-GuCGCGGa -3'
miRNA:   3'- -AGCa-UUGCGC-----UGCGGCCaCuGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 96579 0.67 0.96991
Target:  5'- aCGagcCGCGACGCgUGGcGACGCuGCa -3'
miRNA:   3'- aGCauuGCGCUGCG-GCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 34229 0.67 0.96991
Target:  5'- aUGUGGucucucCGCGGCGCCcagaGACGCGACc -3'
miRNA:   3'- aGCAUU------GCGCUGCGGcca-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 202739 0.67 0.96991
Target:  5'- ---aGACGCGuCGUCGGcGGCGCcGCc -3'
miRNA:   3'- agcaUUGCGCuGCGGCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 163635 0.67 0.96991
Target:  5'- aUCG-AGCgGCGGCGgCGGcGGCaGCGGCa -3'
miRNA:   3'- -AGCaUUG-CGCUGCgGCCaCUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 28646 0.67 0.972674
Target:  5'- gCGUcGACGUGGCaccccCCGGcgaGGCGCAGCu -3'
miRNA:   3'- aGCA-UUGCGCUGc----GGCCa--CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 45982 0.67 0.972674
Target:  5'- gUGUAACgGCGAC-CUGGgcgccGugGCGGCg -3'
miRNA:   3'- aGCAUUG-CGCUGcGGCCa----CugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 186377 0.67 0.972674
Target:  5'- -gGUGAUGCGACGgCGGaGGCuGCGu- -3'
miRNA:   3'- agCAUUGCGCUGCgGCCaCUG-CGUug -5'
15931 3' -54.6 NC_004065.1 + 33540 0.67 0.972674
Target:  5'- aCGUucGGCGCGAucuacaCGCUGGacAUGCAGCg -3'
miRNA:   3'- aGCA--UUGCGCU------GCGGCCacUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 229539 0.67 0.972674
Target:  5'- cCGcgGACGCGGCGCgCGGcccgGAgGCuGACu -3'
miRNA:   3'- aGCa-UUGCGCUGCG-GCCa---CUgCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 63103 0.67 0.972674
Target:  5'- cUGUAGCGUgccgaGACaGCCGGUGGacggccCGUAGCc -3'
miRNA:   3'- aGCAUUGCG-----CUG-CGGCCACU------GCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.