miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 99666 0.66 0.979861
Target:  5'- cCGgcgGCGCGGCGCCgacagcguccGGUGACaaagaGCGAg -3'
miRNA:   3'- aGCau-UGCGCUGCGG----------CCACUG-----CGUUg -5'
15931 3' -54.6 NC_004065.1 + 105169 0.66 0.979861
Target:  5'- cUCG-GACGUGGCGCgGaUGAuCGCGAUg -3'
miRNA:   3'- -AGCaUUGCGCUGCGgCcACU-GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 116786 0.66 0.979431
Target:  5'- uUCGguuGCGCGGCcacguacguguugGCCGGUaccgaccGGgGCAGCg -3'
miRNA:   3'- -AGCau-UGCGCUG-------------CGGCCA-------CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 137915 0.66 0.977643
Target:  5'- cCGUcAAUGCcgucugacGCGCCGGgcucggagcugcUGGCGCAACg -3'
miRNA:   3'- aGCA-UUGCGc-------UGCGGCC------------ACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 52505 0.66 0.977643
Target:  5'- gUUGgcGCGCGGUGgCGGUGGUGCAGa -3'
miRNA:   3'- -AGCauUGCGCUGCgGCCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 135131 0.66 0.977643
Target:  5'- cCGggcgGGCGCGGCG--GGUGAUGaCGACg -3'
miRNA:   3'- aGCa---UUGCGCUGCggCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 162270 0.66 0.977643
Target:  5'- cCGUu-CGUcACGCCGucgGACGCGGCg -3'
miRNA:   3'- aGCAuuGCGcUGCGGCca-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 168553 0.66 0.977643
Target:  5'- -gGUggUG-GACGCCa-UGGCGCAGCg -3'
miRNA:   3'- agCAuuGCgCUGCGGccACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 68378 0.66 0.977643
Target:  5'- aCGaccGAgGCGAagauCGCCGcguucGUGGCGCAGCa -3'
miRNA:   3'- aGCa--UUgCGCU----GCGGC-----CACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 225139 0.66 0.977412
Target:  5'- cUCGgGACGCgGACGCUccuccugGGUGACcgagccgaggGCGGCg -3'
miRNA:   3'- -AGCaUUGCG-CUGCGG-------CCACUG----------CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 105215 0.66 0.975249
Target:  5'- uUCGUgGACGCccggcgGACGUCGGacgaggagauggUGGCGCAGa -3'
miRNA:   3'- -AGCA-UUGCG------CUGCGGCC------------ACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 35421 0.66 0.975249
Target:  5'- gCGUGGaaguUGuCGACGCUGGUacCGCGACu -3'
miRNA:   3'- aGCAUU----GC-GCUGCGGCCAcuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 83317 0.66 0.975249
Target:  5'- gUCGUcgAGCGCGGCGUCgcccaugucgugGGUaACGCAGa -3'
miRNA:   3'- -AGCA--UUGCGCUGCGG------------CCAcUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 152487 0.66 0.975249
Target:  5'- cUCGgu-CGCG-CGCCGGUacuuguccagcaGcCGCAGCu -3'
miRNA:   3'- -AGCauuGCGCuGCGGCCA------------CuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 121084 0.66 0.975249
Target:  5'- gUCGUcGGCGUacUGCCGcaGGCGCAGCg -3'
miRNA:   3'- -AGCA-UUGCGcuGCGGCcaCUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 30700 0.66 0.975249
Target:  5'- cCGU--CGCGACGUCgaGGUGGCG-GACg -3'
miRNA:   3'- aGCAuuGCGCUGCGG--CCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 33540 0.67 0.972674
Target:  5'- aCGUucGGCGCGAucuacaCGCUGGacAUGCAGCg -3'
miRNA:   3'- aGCA--UUGCGCU------GCGGCCacUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 229539 0.67 0.972674
Target:  5'- cCGcgGACGCGGCGCgCGGcccgGAgGCuGACu -3'
miRNA:   3'- aGCa-UUGCGCUGCG-GCCa---CUgCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 45982 0.67 0.972674
Target:  5'- gUGUAACgGCGAC-CUGGgcgccGugGCGGCg -3'
miRNA:   3'- aGCAUUG-CGCUGcGGCCa----CugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 28646 0.67 0.972674
Target:  5'- gCGUcGACGUGGCaccccCCGGcgaGGCGCAGCu -3'
miRNA:   3'- aGCA-UUGCGCUGc----GGCCa--CUGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.