miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 98597 0.67 0.963795
Target:  5'- cCGUcuCuuGACGCCGGUc-CGCAGCa -3'
miRNA:   3'- aGCAuuGcgCUGCGGCCAcuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 71332 0.67 0.963795
Target:  5'- gUUGggcauCGCGGCGCUGGagaaguacaucgUGGCGCAccGCa -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCC------------ACUGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 71949 0.67 0.963795
Target:  5'- gUCGgagGCGaCGcCGCCGGUGGagccggGCAGCc -3'
miRNA:   3'- -AGCau-UGC-GCuGCGGCCACUg-----CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 76746 0.67 0.961803
Target:  5'- aCG-GGCGCGGCGCCGGcgGccucgucaucguccgGCGCAu- -3'
miRNA:   3'- aGCaUUGCGCUGCGGCCa-C---------------UGCGUug -5'
15931 3' -54.6 NC_004065.1 + 186682 0.67 0.960433
Target:  5'- gUCGggGACGCGGCGCgUGG-GGCGUc-- -3'
miRNA:   3'- -AGCa-UUGCGCUGCG-GCCaCUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 173441 0.67 0.960433
Target:  5'- -gGUGACGUucGACGuaCCGGUGGCGgcgcuCGACg -3'
miRNA:   3'- agCAUUGCG--CUGC--GGCCACUGC-----GUUG- -5'
15931 3' -54.6 NC_004065.1 + 133335 0.67 0.960433
Target:  5'- cCGUccugAACcugGCGGuguuguucuUGCCGGUGACGCGAa -3'
miRNA:   3'- aGCA----UUG---CGCU---------GCGGCCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 139702 0.67 0.960433
Target:  5'- uUCGcgGACGCGcuUGCCGGaugaggGACGUGGCc -3'
miRNA:   3'- -AGCa-UUGCGCu-GCGGCCa-----CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 103723 0.67 0.960433
Target:  5'- cUCGggacGACGCGccuccuucgGCGUCGGUucGCGCGGCg -3'
miRNA:   3'- -AGCa---UUGCGC---------UGCGGCCAc-UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 53855 0.67 0.959383
Target:  5'- uUCGcGGCGgucGCGCCGGgauggccacuccguUGGCGCGACg -3'
miRNA:   3'- -AGCaUUGCgc-UGCGGCC--------------ACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 218240 0.67 0.956861
Target:  5'- aUGUGACGgugauaaaCGACGUCagguGGUGACGgAACa -3'
miRNA:   3'- aGCAUUGC--------GCUGCGG----CCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 195332 0.67 0.956861
Target:  5'- uUCGUGcuccuGgGCGGCGCCcgcgucuugaaGGUGGC-CAACa -3'
miRNA:   3'- -AGCAU-----UgCGCUGCGG-----------CCACUGcGUUG- -5'
15931 3' -54.6 NC_004065.1 + 104789 0.67 0.956861
Target:  5'- cUCGaGACGgGcaucgaGCUGGUGACGCGcuGCg -3'
miRNA:   3'- -AGCaUUGCgCug----CGGCCACUGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 122931 0.67 0.955372
Target:  5'- cCG-AACcCGACGCCGGcguuccagacgagGAUGCAGCu -3'
miRNA:   3'- aGCaUUGcGCUGCGGCCa------------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 136608 0.68 0.953075
Target:  5'- -gGUGggguGCGgGGCGCUGGUccGAgGCGGCg -3'
miRNA:   3'- agCAU----UGCgCUGCGGCCA--CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 54562 0.68 0.953075
Target:  5'- gCGUAACGCGGCGC-GGaGACuGCu-- -3'
miRNA:   3'- aGCAUUGCGCUGCGgCCaCUG-CGuug -5'
15931 3' -54.6 NC_004065.1 + 62381 0.68 0.953075
Target:  5'- gCGgggGugGUGGCGgCGGggGugGCGGCc -3'
miRNA:   3'- aGCa--UugCGCUGCgGCCa-CugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 34178 0.68 0.949072
Target:  5'- cCGUGAguUGaCGGCGCCGGcgccaGACGgAGCa -3'
miRNA:   3'- aGCAUU--GC-GCUGCGGCCa----CUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 216319 0.68 0.949072
Target:  5'- cUGUAGacuuuuCGGCGUCGGUGACGguAUa -3'
miRNA:   3'- aGCAUUgc----GCUGCGGCCACUGCguUG- -5'
15931 3' -54.6 NC_004065.1 + 199498 0.68 0.949072
Target:  5'- aCGUAcgucucuucccACGCGGCgGCCGccacGUGcGCGCAGCc -3'
miRNA:   3'- aGCAU-----------UGCGCUG-CGGC----CAC-UGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.