miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 720 1.11 0.005061
Target:  5'- gUCGUAACGCGACGCCGGUGACGCAACg -3'
miRNA:   3'- -AGCAUUGCGCUGCGGCCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 1543 0.71 0.847012
Target:  5'- uUCGcucccCGCGACGCCGGacuCGCGAUg -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 4368 0.7 0.883528
Target:  5'- gCGUGgaGCGCGACGgCGGcGGCGgGAg -3'
miRNA:   3'- aGCAU--UGCGCUGCgGCCaCUGCgUUg -5'
15931 3' -54.6 NC_004065.1 + 7814 0.66 0.981314
Target:  5'- ---gGugGCG-UGCCGGUGaauggggucgugucGCGCAACc -3'
miRNA:   3'- agcaUugCGCuGCGGCCAC--------------UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 8739 0.7 0.883528
Target:  5'- aCGUGACGaccgGAgGCCguGGUGGCgGCGGCa -3'
miRNA:   3'- aGCAUUGCg---CUgCGG--CCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 12941 0.66 0.979861
Target:  5'- uUCGc--CGCGACGaucuauucuuUCGGUGcCGCAACc -3'
miRNA:   3'- -AGCauuGCGCUGC----------GGCCACuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 13810 0.66 0.981912
Target:  5'- -aGUAGCGCcGCGCCuuuacGUcACGCGGCa -3'
miRNA:   3'- agCAUUGCGcUGCGGc----CAcUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 24028 0.67 0.969624
Target:  5'- aCGUaGACGCGAcagagguCGUCGGUGAggauggugaGCGGCg -3'
miRNA:   3'- aGCA-UUGCGCU-------GCGGCCACUg--------CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 28646 0.67 0.972674
Target:  5'- gCGUcGACGUGGCaccccCCGGcgaGGCGCAGCu -3'
miRNA:   3'- aGCA-UUGCGCUGc----GGCCa--CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 29002 0.66 0.979861
Target:  5'- -gGUGGCGaGGCGCCGcGcGcACGCGGCc -3'
miRNA:   3'- agCAUUGCgCUGCGGC-CaC-UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 30700 0.66 0.975249
Target:  5'- cCGU--CGCGACGUCgaGGUGGCG-GACg -3'
miRNA:   3'- aGCAuuGCGCUGCGG--CCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 30775 0.68 0.949072
Target:  5'- gUCGgcgGACGCgGACGCCGacGAUGaCGACu -3'
miRNA:   3'- -AGCa--UUGCG-CUGCGGCcaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 30914 0.69 0.914772
Target:  5'- cUCGUGucCGuCGAcauCGCCGG-GACGCAGa -3'
miRNA:   3'- -AGCAUu-GC-GCU---GCGGCCaCUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 31008 0.71 0.862215
Target:  5'- -gGUGGCGagauggaGAgGCCGGUGACgGCGAa -3'
miRNA:   3'- agCAUUGCg------CUgCGGCCACUG-CGUUg -5'
15931 3' -54.6 NC_004065.1 + 31629 0.7 0.869524
Target:  5'- uUCGUGcgGCuGaCGACGCCGGgcuacggGACGuCGGCg -3'
miRNA:   3'- -AGCAU--UG-C-GCUGCGGCCa------CUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 32220 0.81 0.359714
Target:  5'- aCGUGGCGCcgcgGGCGCUGGUGAC-CAACg -3'
miRNA:   3'- aGCAUUGCG----CUGCGGCCACUGcGUUG- -5'
15931 3' -54.6 NC_004065.1 + 33540 0.67 0.972674
Target:  5'- aCGUucGGCGCGAucuacaCGCUGGacAUGCAGCg -3'
miRNA:   3'- aGCA--UUGCGCU------GCGGCCacUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 34178 0.68 0.949072
Target:  5'- cCGUGAguUGaCGGCGCCGGcgccaGACGgAGCa -3'
miRNA:   3'- aGCAUU--GC-GCUGCGGCCa----CUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 34229 0.67 0.96991
Target:  5'- aUGUGGucucucCGCGGCGCCcagaGACGCGACc -3'
miRNA:   3'- aGCAUU------GCGCUGCGGcca-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 35127 0.66 0.983801
Target:  5'- aCGUAGCaaCGAucucCGCCGGUGuacacCGCGAUc -3'
miRNA:   3'- aGCAUUGc-GCU----GCGGCCACu----GCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.