miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 65550 0.68 0.940401
Target:  5'- aCGcugGGCGCGuCGCCGGcgGGuCGCGAg -3'
miRNA:   3'- aGCa--UUGCGCuGCGGCCa-CU-GCGUUg -5'
15931 3' -54.6 NC_004065.1 + 65823 0.73 0.751685
Target:  5'- aUCGUGAaCGCGAUGCCGGcgGAgaucCGCGcGCa -3'
miRNA:   3'- -AGCAUU-GCGCUGCGGCCa-CU----GCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 66473 0.7 0.896685
Target:  5'- cUGUAcGCGCGGCuGUCGGaGACGCuGCa -3'
miRNA:   3'- aGCAU-UGCGCUG-CGGCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 66625 0.66 0.981912
Target:  5'- cCGcgGGCuGCGGCGCUGcGUGGCG-GACg -3'
miRNA:   3'- aGCa-UUG-CGCUGCGGC-CACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 67341 0.66 0.981912
Target:  5'- aCGUA-CGCGAgagggaagccgcUGCCGGUGuacaucauCGUGACg -3'
miRNA:   3'- aGCAUuGCGCU------------GCGGCCACu-------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 67627 0.75 0.654268
Target:  5'- cCGUAcgGCGUucgaGAUGCCGGUGGCGUcgAGCg -3'
miRNA:   3'- aGCAU--UGCG----CUGCGGCCACUGCG--UUG- -5'
15931 3' -54.6 NC_004065.1 + 68227 0.71 0.862215
Target:  5'- gCGggugAGCGCGuCGgCGGUGACGagGACg -3'
miRNA:   3'- aGCa---UUGCGCuGCgGCCACUGCg-UUG- -5'
15931 3' -54.6 NC_004065.1 + 68378 0.66 0.977643
Target:  5'- aCGaccGAgGCGAagauCGCCGcguucGUGGCGCAGCa -3'
miRNA:   3'- aGCa--UUgCGCU----GCGGC-----CACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 69413 0.66 0.981912
Target:  5'- ---cGACGgGGCGCCaGGUGcGCGcCGACc -3'
miRNA:   3'- agcaUUGCgCUGCGG-CCAC-UGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 70629 0.67 0.966953
Target:  5'- ---aAGCGCagcucucagGACGCUaGGUGGCGCGAUc -3'
miRNA:   3'- agcaUUGCG---------CUGCGG-CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 71332 0.67 0.963795
Target:  5'- gUUGggcauCGCGGCGCUGGagaaguacaucgUGGCGCAccGCa -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCC------------ACUGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 71743 0.71 0.846232
Target:  5'- -gGUGACGCGGCGCuaccgguCGGUGAcCGUguuGGCg -3'
miRNA:   3'- agCAUUGCGCUGCG-------GCCACU-GCG---UUG- -5'
15931 3' -54.6 NC_004065.1 + 71949 0.67 0.963795
Target:  5'- gUCGgagGCGaCGcCGCCGGUGGagccggGCAGCc -3'
miRNA:   3'- -AGCau-UGC-GCuGCGGCCACUg-----CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 76166 0.66 0.981912
Target:  5'- gUCGUcguCGCGaucaGCGUCGaucGACGCAACa -3'
miRNA:   3'- -AGCAuu-GCGC----UGCGGCca-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 76746 0.67 0.961803
Target:  5'- aCG-GGCGCGGCGCCGGcgGccucgucaucguccgGCGCAu- -3'
miRNA:   3'- aGCaUUGCGCUGCGGCCa-C---------------UGCGUug -5'
15931 3' -54.6 NC_004065.1 + 77366 0.71 0.862215
Target:  5'- aCGcAGCGCGACGagcacCCGGUGAUGguGg -3'
miRNA:   3'- aGCaUUGCGCUGC-----GGCCACUGCguUg -5'
15931 3' -54.6 NC_004065.1 + 77626 0.76 0.584557
Target:  5'- cCGUGACGCcgacGGCGCUgucccugaugaaGGUGAUGCGGCa -3'
miRNA:   3'- aGCAUUGCG----CUGCGG------------CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 77960 0.68 0.940401
Target:  5'- aCGUGACGUcgagccccgaGACGCUGGc--CGCGGCg -3'
miRNA:   3'- aGCAUUGCG----------CUGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 78601 0.68 0.939023
Target:  5'- gUCG-AACGCGACGUCgucgcgccgccugaGGUGaACGCGGu -3'
miRNA:   3'- -AGCaUUGCGCUGCGG--------------CCAC-UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 80381 0.72 0.782954
Target:  5'- gCGgcGCGUgcagggccugccgacGGCGCCGGUGACGguGg -3'
miRNA:   3'- aGCauUGCG---------------CUGCGGCCACUGCguUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.