miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 82310 0.74 0.678107
Target:  5'- cCGUAGCGCGGCguccagcucauccgaGCCGGUGGuguCGCuGACg -3'
miRNA:   3'- aGCAUUGCGCUG---------------CGGCCACU---GCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 82772 0.69 0.925705
Target:  5'- cUCGgagaGCaGGCGuCCGGUGGCGcCGACc -3'
miRNA:   3'- -AGCauugCG-CUGC-GGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 82861 0.67 0.963795
Target:  5'- -gGUGGCGaagaGcACGCCgcucauggccacGGUGAUGCGGCa -3'
miRNA:   3'- agCAUUGCg---C-UGCGG------------CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 83179 0.67 0.966953
Target:  5'- aCGgcGCGCGACGUCGcUGA-GCAc- -3'
miRNA:   3'- aGCauUGCGCUGCGGCcACUgCGUug -5'
15931 3' -54.6 NC_004065.1 + 83317 0.66 0.975249
Target:  5'- gUCGUcgAGCGCGGCGUCgcccaugucgugGGUaACGCAGa -3'
miRNA:   3'- -AGCA--UUGCGCUGCGG------------CCAcUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 86893 0.69 0.914772
Target:  5'- aCGcagguCGCGGCGCCGGUcucgcccucggcGGCGCGcGCg -3'
miRNA:   3'- aGCauu--GCGCUGCGGCCA------------CUGCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 87207 0.71 0.831068
Target:  5'- gUCGUugauguACGCauacGACGCCGGUgagaacGACGCGAg -3'
miRNA:   3'- -AGCAu-----UGCG----CUGCGGCCA------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 87501 0.69 0.925705
Target:  5'- gUCGUGAaacCGCGuCGCugacaCGGUGucgacGCGCAGCg -3'
miRNA:   3'- -AGCAUU---GCGCuGCG-----GCCAC-----UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 96579 0.67 0.96991
Target:  5'- aCGagcCGCGACGCgUGGcGACGCuGCa -3'
miRNA:   3'- aGCauuGCGCUGCG-GCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 97644 0.69 0.902321
Target:  5'- gCGgcACGgaGACGCCGGUuuguucgcgaucuGGCGCAGg -3'
miRNA:   3'- aGCauUGCg-CUGCGGCCA-------------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 98130 0.66 0.981912
Target:  5'- cUCG-AACcagGCGGCGgCGGUG-CGCAucGCg -3'
miRNA:   3'- -AGCaUUG---CGCUGCgGCCACuGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 98597 0.67 0.963795
Target:  5'- cCGUcuCuuGACGCCGGUc-CGCAGCa -3'
miRNA:   3'- aGCAuuGcgCUGCGGCCAcuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 99604 0.7 0.87663
Target:  5'- -aGUAG-GUGACGCCGGUGAgGaCGAa -3'
miRNA:   3'- agCAUUgCGCUGCGGCCACUgC-GUUg -5'
15931 3' -54.6 NC_004065.1 + 99666 0.66 0.979861
Target:  5'- cCGgcgGCGCGGCGCCgacagcguccGGUGACaaagaGCGAg -3'
miRNA:   3'- aGCau-UGCGCUGCGG----------CCACUG-----CGUUg -5'
15931 3' -54.6 NC_004065.1 + 100574 0.73 0.760088
Target:  5'- cUCG-AGCGCGACGCCGGagaccuuagguaUGAuggcgguCGCGGCc -3'
miRNA:   3'- -AGCaUUGCGCUGCGGCC------------ACU-------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 102015 0.73 0.722158
Target:  5'- gUCGUAguugGCGCGGCGggccaccUCGGUGAccCGCGGCg -3'
miRNA:   3'- -AGCAU----UGCGCUGC-------GGCCACU--GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 102268 0.66 0.981912
Target:  5'- gCGUuacaGGCGCagaaGACGUCGGUcaGGCGCAc- -3'
miRNA:   3'- aGCA----UUGCG----CUGCGGCCA--CUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 103530 0.72 0.814436
Target:  5'- gCGcAugGCGACGCgGGUGcagcGCGcCAACa -3'
miRNA:   3'- aGCaUugCGCUGCGgCCAC----UGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 103723 0.67 0.960433
Target:  5'- cUCGggacGACGCGccuccuucgGCGUCGGUucGCGCGGCg -3'
miRNA:   3'- -AGCa---UUGCGC---------UGCGGCCAc-UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 104789 0.67 0.956861
Target:  5'- cUCGaGACGgGcaucgaGCUGGUGACGCGcuGCg -3'
miRNA:   3'- -AGCaUUGCgCug----CGGCCACUGCGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.