miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 105128 0.66 0.983801
Target:  5'- cCGcugGACGCGGCGCacaucgaGGa-GCGCAACc -3'
miRNA:   3'- aGCa--UUGCGCUGCGg------CCacUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 105169 0.66 0.979861
Target:  5'- cUCG-GACGUGGCGCgGaUGAuCGCGAUg -3'
miRNA:   3'- -AGCaUUGCGCUGCGgCcACU-GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 105215 0.66 0.975249
Target:  5'- uUCGUgGACGCccggcgGACGUCGGacgaggagauggUGGCGCAGa -3'
miRNA:   3'- -AGCA-UUGCG------CUGCGGCC------------ACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 105658 0.66 0.979861
Target:  5'- uUCGcGGCG-GAUGCCgcGGUGACGauCGACa -3'
miRNA:   3'- -AGCaUUGCgCUGCGG--CCACUGC--GUUG- -5'
15931 3' -54.6 NC_004065.1 + 106563 0.67 0.966953
Target:  5'- cUCGcAGCGCGGguCGCUGGgcGACGUGAUc -3'
miRNA:   3'- -AGCaUUGCGCU--GCGGCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 109246 0.73 0.742253
Target:  5'- gCGgua-GCGGCGUCGGUGACGaUGACg -3'
miRNA:   3'- aGCauugCGCUGCGGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 110697 0.66 0.983801
Target:  5'- gUGUGACGUGA-GCCGccGcCGCGACu -3'
miRNA:   3'- aGCAUUGCGCUgCGGCcaCuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 113933 0.68 0.940401
Target:  5'- gUCGacGACGCGGCGCuCGGgggcuggGACGgaGACg -3'
miRNA:   3'- -AGCa-UUGCGCUGCG-GCCa------CUGCg-UUG- -5'
15931 3' -54.6 NC_004065.1 + 114863 0.69 0.914772
Target:  5'- gUCGggGCGCGGCGCCc--GACGaCGAUg -3'
miRNA:   3'- -AGCauUGCGCUGCGGccaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 116786 0.66 0.979431
Target:  5'- uUCGguuGCGCGGCcacguacguguugGCCGGUaccgaccGGgGCAGCg -3'
miRNA:   3'- -AGCau-UGCGCUG-------------CGGCCA-------CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 117398 0.69 0.925705
Target:  5'- cUCGgccGCGCG-CGCUGGgcuCGCGGCg -3'
miRNA:   3'- -AGCau-UGCGCuGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 120104 0.7 0.890214
Target:  5'- cCGgGACGCGACGgCGGc--CGCGGCg -3'
miRNA:   3'- aGCaUUGCGCUGCgGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 120150 0.71 0.847012
Target:  5'- gCGgccGCgGCGACGCCGGUGGCaccgccCGGCa -3'
miRNA:   3'- aGCau-UG-CGCUGCGGCCACUGc-----GUUG- -5'
15931 3' -54.6 NC_004065.1 + 121084 0.66 0.975249
Target:  5'- gUCGUcGGCGUacUGCCGcaGGCGCAGCg -3'
miRNA:   3'- -AGCA-UUGCGcuGCGGCcaCUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 121444 0.67 0.966953
Target:  5'- gCGUGcgguuggaGCGGauggUGCCGGUGucgGCGCAGCg -3'
miRNA:   3'- aGCAUug------CGCU----GCGGCCAC---UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 122931 0.67 0.955372
Target:  5'- cCG-AACcCGACGCCGGcguuccagacgagGAUGCAGCu -3'
miRNA:   3'- aGCaUUGcGCUGCGGCCa------------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 123672 0.69 0.93083
Target:  5'- aCGUGGCGCGcUGCCcGUG-CaGCAGCg -3'
miRNA:   3'- aGCAUUGCGCuGCGGcCACuG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 133038 0.73 0.761017
Target:  5'- aCGUcgcagcAGCGCGACGgaCGGccGGCGCAGCa -3'
miRNA:   3'- aGCA------UUGCGCUGCg-GCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 133335 0.67 0.960433
Target:  5'- cCGUccugAACcugGCGGuguuguucuUGCCGGUGACGCGAa -3'
miRNA:   3'- aGCA----UUG---CGCU---------GCGGCCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 133731 0.71 0.839129
Target:  5'- gUCGUGugGaCGGCGUCcGUGACGCc-- -3'
miRNA:   3'- -AGCAUugC-GCUGCGGcCACUGCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.