miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 186913 0.67 0.96991
Target:  5'- uUCGcgAGCGCGgaucgGCGCCGG-GuCGCGGa -3'
miRNA:   3'- -AGCa-UUGCGC-----UGCGGCCaCuGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 186682 0.67 0.960433
Target:  5'- gUCGggGACGCGGCGCgUGG-GGCGUc-- -3'
miRNA:   3'- -AGCa-UUGCGCUGCG-GCCaCUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 186377 0.67 0.972674
Target:  5'- -gGUGAUGCGACGgCGGaGGCuGCGu- -3'
miRNA:   3'- agCAUUGCGCUGCgGCCaCUG-CGUug -5'
15931 3' -54.6 NC_004065.1 + 184786 0.77 0.533663
Target:  5'- ---cGACGCGACGggcggaggaggaCGGUGACGCAACg -3'
miRNA:   3'- agcaUUGCGCUGCg-----------GCCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 184498 0.74 0.713442
Target:  5'- cCGc--CGCGGCGCCgGGUGGCGUAGa -3'
miRNA:   3'- aGCauuGCGCUGCGG-CCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 176179 0.71 0.854709
Target:  5'- aCG-AugGCGACGgCGGcgGAgGCAGCu -3'
miRNA:   3'- aGCaUugCGCUGCgGCCa-CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 173441 0.67 0.960433
Target:  5'- -gGUGACGUucGACGuaCCGGUGGCGgcgcuCGACg -3'
miRNA:   3'- agCAUUGCG--CUGC--GGCCACUGC-----GUUG- -5'
15931 3' -54.6 NC_004065.1 + 168555 0.7 0.87663
Target:  5'- -gGUGGCaGCGGCGgCGGcGGCGaCAGCg -3'
miRNA:   3'- agCAUUG-CGCUGCgGCCaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 168553 0.66 0.977643
Target:  5'- -gGUggUG-GACGCCa-UGGCGCAGCg -3'
miRNA:   3'- agCAuuGCgCUGCGGccACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 166135 0.74 0.703696
Target:  5'- gUCGgcagaGACGuCGGCGCCGGcGGCaGCGGCg -3'
miRNA:   3'- -AGCa----UUGC-GCUGCGGCCaCUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 164658 0.66 0.980701
Target:  5'- gCGgcGCGCGuCGCCaGGUcGAuccgaccgacccaccCGCAGCu -3'
miRNA:   3'- aGCauUGCGCuGCGG-CCA-CU---------------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 164522 0.72 0.814436
Target:  5'- gUCGUAgcgcaGCGCGAacaGCCGGuUGAUGUugAACg -3'
miRNA:   3'- -AGCAU-----UGCGCUg--CGGCC-ACUGCG--UUG- -5'
15931 3' -54.6 NC_004065.1 + 164467 0.68 0.944848
Target:  5'- -gGUAcuCGCGAccCGCCGGcGACGCGc- -3'
miRNA:   3'- agCAUu-GCGCU--GCGGCCaCUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 163635 0.67 0.96991
Target:  5'- aUCG-AGCgGCGGCGgCGGcGGCaGCGGCa -3'
miRNA:   3'- -AGCaUUG-CGCUGCgGCCaCUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 163484 0.8 0.408234
Target:  5'- cCGUcg-GCGGCGCCGGUGGCgGCGGCu -3'
miRNA:   3'- aGCAuugCGCUGCGGCCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 162270 0.66 0.977643
Target:  5'- cCGUu-CGUcACGCCGucgGACGCGGCg -3'
miRNA:   3'- aGCAuuGCGcUGCGGCca-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 159890 0.7 0.869524
Target:  5'- gUCGUAACGUuaguucguuCGUCGGUGGCGaGACg -3'
miRNA:   3'- -AGCAUUGCGcu-------GCGGCCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 154150 0.67 0.963795
Target:  5'- cCGggcgGugGCGGCGgCGGcGGCgGCGGCu -3'
miRNA:   3'- aGCa---UugCGCUGCgGCCaCUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 153348 0.66 0.981912
Target:  5'- uUCGggGACgGCGGCGCCG---ACGCGAUc -3'
miRNA:   3'- -AGCa-UUG-CGCUGCGGCcacUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 152487 0.66 0.975249
Target:  5'- cUCGgu-CGCG-CGCCGGUacuuguccagcaGcCGCAGCu -3'
miRNA:   3'- -AGCauuGCGCuGCGGCCA------------CuGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.